Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq980070 179 6e-40 >seq980070 Length=1613 Score = 179 bits (198), Expect = 6e-40 Identities = 228/314 (73%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 202490 CTTTCTTGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATC 202549 || || || |||||||| ||||| || || ||||| ||||| ||||| || || || ||| Sbjct 522 CTGTCCTGCCAGCTCTACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCCTTCAATATC 463 Query 202550 GCGTCTTACGCCTTGCTGGTACACATGTTTGCACAACAGGCGAACATGGCGGTAGGCGAC 202609 || || |||||| ||||| |||||| | || || ||||| | ||| || |||||| Sbjct 462 GCTTCCTACGCCCTGCTGACCCACATGATGGCCCAGCAGGCCGGCCTGGAAGTGGGCGAC 403 Query 202610 TTCGTCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACCTC 202669 ||| ||||||| || || || || |||||||| ||||| ||||||| | || || Sbjct 402 TTCATCTGGACCGGCGGCGACTGCCACCTGTACTCGAACCACATGGAACAGGTCGAGCTG 343 Query 202670 CAACTTACCCGTGACCCTAAACCGTTACCGAAGTTGGTTATCAAACGTAAGCCCGATTCC 202729 || || | || || ||| | || | | |||| ||||| || ||||||||||| Sbjct 342 CAGCTCGCGCGCGAAGAGCGTCCGCTGCCCAGGCTGGTCATCAAGCGCAAGCCCGATTCG 283 Query 202730 ATCTTCGACTACAAATTCGAAGACTTCGAGGTTGTCGATTACATTTCGCATCCGGCGATT 202789 | |||||||||| ||||| ||||||||| | |||| ||| | ||||||| ||||| Sbjct 282 CTGTTCGACTACAGGTTCGACGACTTCGAGATGGTCGGCTACGATCCGCATCCCGCGATC 223 Query 202790 AAAGCGCCCGTCGC 202803 || || || || || Sbjct 222 AAGGCCCCGGTGGC 209 Score = 156 bits (172), Expect = 6e-33 Identities = 203/281 (72%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 201813 TGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGACCGTACCGGTACGGGCACCCTCT 201872 |||| |||| ||||| | || | || || ||| || |||||||| ||||| | | Sbjct 974 TGCGCCATGTACGCGACCATGGCGCGGTCAAGCTCGATCGCACCGGTACCGGCACGCGTT 915 Query 201873 CTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGAAGGTTTTCCGCTGGTCACCACCA 201932 | || ||||| |||||||||||| ||| | || || || || |||||||| || |||| Sbjct 914 CCGTGTTCGGCTACCAGATGCGCTTCAACCTGCAGGACGGCTTCCCGCTGGTGACGACCA 855 Query 201933 AAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCTGTGGTTCCTCATGGGTGACACCA 201992 | ||||| ||||| || ||||||||||| || | |||||||| | ||| |||| Sbjct 854 AGAAGGTGCACCTGAAGTCGATCATCCATGAACTCATCTGGTTCCTGAACGGTTCGACCA 795 Query 201993 ACATCCAGTATTTGAAAGACAACAACGTCACCATCTGGGACGAATGGGCGGATAAAAACG 202052 | ||| || |||| || ||| |||| | ||||||||||| ||||| || | |||| Sbjct 794 ATATCGCCTACCTGAAGGAAAACGGCGTCTCGATCTGGGACGAGTGGGCCGACGAGAACG 735 Query 202053 GTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTAGCTGG 202093 | || | |||||| | ||||| | || ||||| |||||| Sbjct 734 GCAACCTGGGCCCGATCTACGGCTACCAGTGGCGCAGCTGG 694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 767535792033960