Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= NC_031107.1
Length=246291
Score E
Sequences producing significant alignments: (Bits) Value
seq980070 179 6e-40
>seq980070
Length=1613
Score = 179 bits (198), Expect = 6e-40
Identities = 228/314 (73%), Gaps = 0/314 (0%)
Strand=Plus/Minus
Query 202490 CTTTCTTGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATC 202549
|| || || |||||||| ||||| || || ||||| ||||| ||||| || || || |||
Sbjct 522 CTGTCCTGCCAGCTCTACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCCTTCAATATC 463
Query 202550 GCGTCTTACGCCTTGCTGGTACACATGTTTGCACAACAGGCGAACATGGCGGTAGGCGAC 202609
|| || |||||| ||||| |||||| | || || ||||| | ||| || ||||||
Sbjct 462 GCTTCCTACGCCCTGCTGACCCACATGATGGCCCAGCAGGCCGGCCTGGAAGTGGGCGAC 403
Query 202610 TTCGTCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACCTC 202669
||| ||||||| || || || || |||||||| ||||| ||||||| | || ||
Sbjct 402 TTCATCTGGACCGGCGGCGACTGCCACCTGTACTCGAACCACATGGAACAGGTCGAGCTG 343
Query 202670 CAACTTACCCGTGACCCTAAACCGTTACCGAAGTTGGTTATCAAACGTAAGCCCGATTCC 202729
|| || | || || ||| | || | | |||| ||||| || |||||||||||
Sbjct 342 CAGCTCGCGCGCGAAGAGCGTCCGCTGCCCAGGCTGGTCATCAAGCGCAAGCCCGATTCG 283
Query 202730 ATCTTCGACTACAAATTCGAAGACTTCGAGGTTGTCGATTACATTTCGCATCCGGCGATT 202789
| |||||||||| ||||| ||||||||| | |||| ||| | ||||||| |||||
Sbjct 282 CTGTTCGACTACAGGTTCGACGACTTCGAGATGGTCGGCTACGATCCGCATCCCGCGATC 223
Query 202790 AAAGCGCCCGTCGC 202803
|| || || || ||
Sbjct 222 AAGGCCCCGGTGGC 209
Score = 156 bits (172), Expect = 6e-33
Identities = 203/281 (72%), Gaps = 0/281 (0%)
Strand=Plus/Minus
Query 201813 TGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGACCGTACCGGTACGGGCACCCTCT 201872
|||| |||| ||||| | || | || || ||| || |||||||| ||||| | |
Sbjct 974 TGCGCCATGTACGCGACCATGGCGCGGTCAAGCTCGATCGCACCGGTACCGGCACGCGTT 915
Query 201873 CTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGAAGGTTTTCCGCTGGTCACCACCA 201932
| || ||||| |||||||||||| ||| | || || || || |||||||| || ||||
Sbjct 914 CCGTGTTCGGCTACCAGATGCGCTTCAACCTGCAGGACGGCTTCCCGCTGGTGACGACCA 855
Query 201933 AAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCTGTGGTTCCTCATGGGTGACACCA 201992
| ||||| ||||| || ||||||||||| || | |||||||| | ||| ||||
Sbjct 854 AGAAGGTGCACCTGAAGTCGATCATCCATGAACTCATCTGGTTCCTGAACGGTTCGACCA 795
Query 201993 ACATCCAGTATTTGAAAGACAACAACGTCACCATCTGGGACGAATGGGCGGATAAAAACG 202052
| ||| || |||| || ||| |||| | ||||||||||| ||||| || | ||||
Sbjct 794 ATATCGCCTACCTGAAGGAAAACGGCGTCTCGATCTGGGACGAGTGGGCCGACGAGAACG 735
Query 202053 GTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTAGCTGG 202093
| || | |||||| | ||||| | || ||||| ||||||
Sbjct 734 GCAACCTGGGCCCGATCTACGGCTACCAGTGGCGCAGCTGG 694
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 767535792033960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |