Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq980070 201 2e-46 >seq980070 Length=1613 Score = 201 bits (222), Expect = 2e-46 Identities = 233/314 (74%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 |||||||| ||||| ||||||||||| || ||| |||||||||| || || ||||| ||| Sbjct 522 CTGTCCTGCCAGCTCTACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCCTTCAATATC 463 Query 196809 GCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGAT 196868 ||||| ||||| ||| || |||||| |||| ||||||| | ||| | ||| || Sbjct 462 GCTTCCTACGCCCTGCTGACCCACATGATGGCCCAGCAGGCCGGCCTGGAAGTGGGCGAC 403 Query 196869 TTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGTTG 196928 ||| ||||||| |||||||| ||| |||||||| ||||| ||||||||| | | || Sbjct 402 TTCATCTGGACCGGCGGCGACTGCCACCTGTACTCGAACCACATGGAACAGGTCGAGCTG 343 Query 196929 CAGCTCTCCCGTGTACCGCATGATCTGCCTAAGCTCGTTATCAAACGTAAACCGGATTCC 196988 |||||| | || | | || | ||||| | ||| || ||||| || || || ||||| Sbjct 342 CAGCTCGCGCGCGAAGAGCGTCCGCTGCCCAGGCTGGTCATCAAGCGCAAGCCCGATTCG 283 Query 196989 ATTTTCGACTATAAGTTCGAAGATTTTGAAATCGTGGGTTACGAAAGCCACCCACCCATT 197048 | |||||||| | |||||| || || || || || || ||||| || || | || Sbjct 282 CTGTTCGACTACAGGTTCGACGACTTCGAGATGGTCGGCTACGATCCGCATCCCGCGATC 223 Query 197049 AAGGCACCGGTTGC 197062 ||||| ||||| || Sbjct 222 AAGGCCCCGGTGGC 209 Score = 150 bits (166), Expect = 3e-31 Identities = 181/245 (74%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 196066 AAGCT-GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGAC 196124 ||||| || || ||||| || ||||| || | ||||| || |||||||| || || Sbjct 945 AAGCTCGATCGCACCGGTACCGGCACGCGTTCCGTGTTCGGCTACCAGATGCGCTTCAAC 886 Query 196125 CTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCAC 196184 |||| | || ||||||||||| || ||||| ||| |||||||| || |||||||| Sbjct 885 CTGCAGGACGGCTTCCCGCTGGTGACGACCAAGAAGGTGCACCTGAAGTCGATCATCCAT 826 Query 196185 GAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTC 196244 ||||| | |||||||||||||| ||||| ||| || ||||| || ||| |||| Sbjct 825 GAACTCATCTGGTTCCTGAACGGTTCGACCAATATCGCCTACCTGAAGGAAAACGGCGTC 766 Query 196245 AGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAG 196304 |||||||| |||||||| || || | ||| | || ||||| ||||||| | ||| Sbjct 765 TCGATCTGGGACGAGTGGGCCGACGAGAACGGCAACCTGGGCCCGATCTACGGCTACCAG 706 Query 196305 TGGCG 196309 ||||| Sbjct 705 TGGCG 701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 750299423735160