Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq52972 80.6 1e-10 >seq52972 Length=254 Score = 80.6 bits (88), Expect = 1e-10 Identities = 118/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 52065 CGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTGGATGATATGGCGTTGGCTCCC 52124 || |||| || || ||||| |||||||||| || | ||| | || | ||| Sbjct 195 CGCCGGCTGATCGTGTCTGCCTGGAATGTGGCCGACATCCCGCGCATGAAGCTGCCGCCC 136 Query 52125 TGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCGTGCCATTTGTATCAG 52184 |||||| | | ||||| |||||||| || || || ||||| |||||||| | || ||| Sbjct 135 TGCCATGCGTTCTTCCAGTTCTATGTGGCCGACGGCAAGCTGTCGTGCCAGCTCTACCAG 76 Query 52185 CGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGCTA 52231 || ||| | || ||| | ||||| | ||| || ||||||||||| Sbjct 75 CGCAGCGCCCATATCTTCCTCGGCGTGCGGTTCAAGATTGCCAGCTA 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185405367061610