Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq18551 201 1e-46 seq828162 188 7e-43 >seq18551 Length=1011 Score = 201 bits (222), Expect = 1e-46 Identities = 207/270 (77%), Gaps = 18/270 (7%) Strand=Plus/Plus Query 8351 CTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCG 8410 ||||||| |||| ||| || || |||| |||| |||||||||||| || ||||| || Sbjct 56 CTGTTGCACAGGGTGGGGTACAATGGCGCCATCTTTGCTCACTGCAACATCTGCCTCACG 115 Query 8411 GGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACA---------GGC 8461 ||| ||||| ||| |||| ||||||||||| |||||||||| |||| | | Sbjct 116 GGTCCAAGCGATTGTCCTCCCTCAGCCTCCCAGGTAGCTGGGACTACACCACACTGGGAC 175 Query 8462 AAAA------GCCACCACGCCAAGCTAATTTTT-GTATTTTTAGTAGAGAGAGGGTTTCA 8514 | | ||||||| ||| ||||||||||| | ||||||||||| || || |||||| Sbjct 176 TACACCAGCTGCCACCATGCCTAGCTAATTTTTTGGATTTTTAGTAGTGACAGCGTTTCA 235 Query 8515 CCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTC 8574 | | ||||||||| |||||| || ||| | |||| |||||||| | ||||| |||||| Sbjct 236 CTGTATTGGCCAGGATGGTCTTGATCTCTTCACCT--TGTGATCCCCTTGCCTTGGCCTC 293 Query 8575 CCAAAGTGCTGGGATTACAGGCATGAGCCA 8604 | || |||||||||||||||| ||||||| Sbjct 294 CAAATTTGCTGGGATTACAGGCCTGAGCCA 323 >seq828162 Length=217 Score = 188 bits (208), Expect = 7e-43 Identities = 133/151 (88%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 8467 CCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCA 8526 ||||||| || ||||||||||||||||||||||||||| | |||||||||| ||||||| Sbjct 217 CCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGACGGAGTTTCACCATCTTGGCCA 158 Query 8527 GGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGG 8586 ||| |||| ||||||||||||||| ||||||||| |||||| ||||||||||||||| Sbjct 157 TGCTAGTCTTGAACTCCTGACCTCA--TGATCCACCCACCTCGGACTCCCAAAGTGCTGG 100 Query 8587 GATTACAGGCATGAGCCACCGCGCCTGGCCC 8617 |||||||||| |||||||| || || ||||| Sbjct 99 GATTACAGGCGTGAGCCACTGCACCCGGCCC 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507942994541400