Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6 168 1e-36 seq7 156 9e-33 seq9 109 1e-18 seq5 105 1e-17 seq1 105 1e-17 seq12 104 5e-17 seq11 104 5e-17 seq8 104 5e-17 seq3 98.7 2e-15 seq10 93.3 9e-14 >seq6 Length=21016138 Score = 168 bits (186), Expect = 1e-36 Identities = 315/456 (69%), Gaps = 10/456 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||||| ||||| || | | || || || || ||| | || || || ||| Sbjct 6618222 TTCGCCGAGCGCCTCGTGGCATTCGCCTGCGTCGAGGGGATTTTCTTCTCGGGCTCGTTC 6618163 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTG---TGATGCCTGGCCTCGGTCTGTCTAAC 230289 ||||||||||| |||||| || || ||| | ||||| || ||| | | || ||| Sbjct 6618162 TGCGCCATCTTCTGGCTG---AAAAAGCGTGGCCTCATGCCGGGACTCACTTTCTCCAAC 6618106 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAG 230349 ||| ||||| ||||||||||||||||| | |||| | || | ||| Sbjct 6618105 GAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCCTGCCTCCTCTATGATCTC 6618046 Query 230350 CTCCAGAACAAGCTACCATTCGAGACG-GTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408 |||||| |||||| | || | || ||| | ||| | | || || || || | Sbjct 6618045 CTCCAGGGCAAGCT-CGATGAGGCTCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACAT 6617987 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAAC 230467 ||| | ||||||| | || ||||| | || ||||| || | |||||||||| || | Sbjct 6617986 CGAGAGGGAGTTCGTCTGCGACGCGCTCCCC-GTCGCGCTCGTCGGCATGAACGGCGACC 6617928 Query 230468 TTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGA 230527 | ||| | ||||||||||| ||||| ||||||||| | | | || || || | | ||| Sbjct 6617927 TCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCTTGCTCATGGCGCTCGGCTGCAAGA 6617868 Query 230528 AAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGA 230587 | |||||||| ||||| || | | ||||||||||| || || || || |||| Sbjct 6617867 AGATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGA 6617808 Query 230588 CCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 |||||||||| || ||||||||| ||||||| |||| Sbjct 6617807 CCAACTTCTTTGAGAAGCGTGTCGGTGACTACCAGA 6617772 >seq7 Length=22540073 Score = 156 bits (172), Expect = 9e-33 Identities = 313/456 (69%), Gaps = 10/456 (2%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||||| |||||||| | | || || || || || | || || || ||| Sbjct 17337577 TTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTC 17337636 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| || | ||||| || ||| | || |||||| Sbjct 17337637 TGCGCCATCTTCTGGCTCAAGAAGCGTGGACTCATGCCCGGGCTCACCTTCTCCAACGAG 17337696 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAG--C 230350 ||||| ||||||||||| ||||| | |||| || || | || | | || | Sbjct 17337697 CTCATCTCCCGCGACGAGGGGCTCCACTGCGACTTCG-CGTGCCTC-GTCTACGAACTCC 17337754 Query 230351 TCCAGAACAAGCT--ACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408 ||| | |||||| || | || | ||| | || || | || || ||||| | Sbjct 17337755 TCCGAAGCAAGCTTGACGAGTCCCGC--GTCCGCGAGATTGTTGCTGATGCCGTTGACAT 17337812 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAAC 230467 ||| | ||||||| | || ||||| | ||| ||||| || |||| ||||||| || | Sbjct 17337813 CGAGAGGGAGTTCGTCTGCGACGC-ACTCCCCGTCGCGCTCGTTGGGATGAACGGGGAGC 17337871 Query 230468 TTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGA 230527 | ||| | ||||||||||| || || || || ||| | | | || || || | | ||| Sbjct 17337872 TGATGAGCCAGTACATCGAGTTTGTCGCTGATCGCTTGCTCATGGCGCTGGGCTGCAAGA 17337931 Query 230528 AAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGA 230587 | ||||||| | |||||||| | | ||||||||||| || || || || |||| Sbjct 17337932 AGATGTACAATGTTGTTAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGA 17337991 Query 230588 CCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 ||||||||||||| ||||| ||| ||||||| |||| Sbjct 17337992 CCAACTTCTTCGAGAAGCGCGTCGGTGACTACCAGA 17338027 >seq9 Length=15534364 Score = 109 bits (120), Expect = 1e-18 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 |||||||||||||||||||||||||||||| || || |||| || ||||||||||||||| Sbjct 7598796 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 7598855 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 7598856 AGCCCCACGGTGGGC 7598870 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 6407595 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6407536 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6407535 CCCACGGTGGGC 6407524 >seq5 Length=20807039 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 14568913 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 14568854 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 14568853 CCCCACGGTGGGC 14568841 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 9917327 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9917268 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9917267 CCCACGGTGGGC 9917256 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 17507777 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17507718 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 17507717 CCCACGGTGGGC 17507706 Score = 104 bits (114), Expect = 5e-17 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 165700 TAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGT 165759 |||||| | ||||||||||||||||||||||||||| || || |||| || |||||||| Sbjct 17881744 TAAAAC-CAAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGT 17881686 Query 165760 GGGTTCGAGCCCCACGATGGGC 165781 |||||||||||||||| ||||| Sbjct 17881685 GGGTTCGAGCCCCACGGTGGGC 17881664 >seq1 Length=32922458 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 26696513 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 26696454 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 26696453 CCCCACGGTGGGC 26696441 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 22730642 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 22730701 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 22730702 CCCACGGTGGGC 22730713 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 31865155 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 31865096 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 31865095 GCCCCACGGTGGGC 31865082 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || ||||||||| |||||||| Sbjct 22028051 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGAGTTCGAGC 22028110 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 22028111 CCCACGGTGGGC 22028122 Score = 93.3 bits (102), Expect = 9e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 165713 CGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||| ||||||||||||| || || |||| || ||||||||||||||||||||| Sbjct 32842552 CGTCTAGCTCGGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 32842611 Query 165773 ACGATGGGC 165781 ||| ||||| Sbjct 32842612 ACGGTGGGC 32842620 >seq12 Length=17761961 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 14601220 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14601279 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14601280 CCCACGGTGGGC 14601291 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 14911795 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14911736 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14911735 CCCACGGTGGGC 14911724 >seq11 Length=21046960 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 20903103 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 20903162 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 20903163 CCCACGGTGGGC 20903174 >seq8 Length=20165712 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 12879750 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12879809 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12879810 CCCACGGTGGGC 12879821 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 13071555 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13071614 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13071615 CCCACGGTGGGC 13071626 >seq3 Length=29602667 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 14105957 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14106016 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14106017 CCCACGGTGGGC 14106028 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGT-GGTCGTGGGTTCGAG 165768 ||||||||||||||||||||||||||| || || |||| || || |||||||| |||||| Sbjct 25626850 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGGTCGTGGTTTCGAG 25626791 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 25626790 CCCCACGGTGGGC 25626778 >seq10 Length=15557830 Score = 93.3 bits (102), Expect = 9e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||| ||||||||| Sbjct 10595648 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTTGGTTCGAGC 10595589 Query 165770 CCCACGATG 165778 |||||| || Sbjct 10595588 CCCACGGTG 10595580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823837359560