Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6 105 8e-18 seq2 82.4 9e-11 >seq6 Length=21016138 Score = 105 bits (116), Expect = 8e-18 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| |||||||| ||||||||||| | || | |||||||| || |||||| Sbjct 6618062 CAGGCGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGT 6618121 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 || ||||| |||||||||||||| ||||| || |||| |||| || || || || ||||| Sbjct 6618122 CCCGGCATGAGGCCACGCTTTTTCAGCCAGAAGATGG-CGCAGAACGAGCCCGAGAAGAA 6618180 Query 24254 AATTCCTTCTAC 24265 ||| || || || Sbjct 6618181 AATCCCCTCGAC 6618192 Score = 91.5 bits (100), Expect = 2e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 54434 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCG 54493 || || | ||| || ||||| || ||||||||| || ||| | |||| ||| || | | Sbjct 2855485 TTGAAAAGGGTTGGCGAAGCATGAGTAAACCATCGTTGAGACATCAGATGGTAGGTTTTG 2855544 Query 54494 ATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 54552 ||||| | || || || | ||| || || || |||| || | ||||||||||||||| Sbjct 2855545 ATAGCAGCCTCAATGTCATCCTTG-TGTATCCCCACTGAAACTCTCATTAACATGTGCTG 2855603 Query 54553 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAA 54612 || || ||||||| |||| | |||| | ||| || | |||| ||| || || Sbjct 2855604 TGGCCTCTCAACGACCTTGCCACCAAGCTTCAAGAGGTAAGACCTCTCCAGAGTCTTGAA 2855663 Query 54613 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 |||||| |||| || |||||| | || ||||| || Sbjct 2855664 ACCAAAGTAGTCATAATCAAAGTCCCTATCATAAATTAT 2855702 >seq2 Length=26406337 Score = 82.4 bits (90), Expect = 9e-11 Identities = 97/128 (76%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 53518 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 53577 ||| || | |||||| || |||||||||||||| ||||| || ||||| ||| |||| || Sbjct 25079750 AATGAAAGTGTCTGCCAAGCCTTGAACACCAATTCCGATTGGCCTATGCCTCATATTTGA 25079691 Query 53578 GATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTT---TC 53633 | | || ||| || ||| ||| |||||||||| || ||||| ||||| || | Sbjct 25079690 TCTCTTTGCAGTCT-CAACAGGGTAAAAATTAATATCAATTATTTTGTTGAGATTCCATG 25079632 Query 53634 TGACAATT 53641 |||||||| Sbjct 25079631 TGACAATT 25079624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721510941760