Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq4 89.7 8e-13 seq2 86.0 9e-12 seq11 84.2 3e-11 >seq4 Length=23326293 Score = 89.7 bits (98), Expect = 8e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || ||||| || || || | ||| |||| | Sbjct 20244979 AATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACCATCACCTTGGAGGTTGAGTCCTC 20245038 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||||| ||| | || || || || ||||| || || || || || ||||| Sbjct 20245039 TGATACAATTGACAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGATCA 20245098 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || || || || || || | |||||| |||| || | | |||||||| Sbjct 20245099 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTGCTGATTATAA 20245158 Query 124718 TATTCAAAAAGAATCAACTTTGCA 124741 || || ||||||||||| |||| Sbjct 20245159 CATCCAGAAAGAATCAACCCTGCA 20245182 >seq2 Length=26406337 Score = 86.0 bits (94), Expect = 9e-12 Identities = 138/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || ||||| || || ||| | ||| |||| Sbjct 20341140 ATGCAGATCTTTGTTAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTTGAGATTTCC 20341081 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| || || || || || || || || || || || ||| Sbjct 20341080 GACACCATCGACAATGTCAAAGCCAAGATCCAGGACAA-GAGGGCATCCCCCCAGACCAA 20341022 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| || || ||| |||||||| | |||||| | | || || ||| Sbjct 20341021 CAGAGGCTGATTTTTGCTGGCAAGCAACTAGAGGATGGCCGAACACTCGCTGACTACAAT 20340962 Query 124719 ATTCAAAAAGAATCAAC 124735 |||||||| ||||| || Sbjct 20340961 ATTCAAAAGGAATCCAC 20340945 >seq11 Length=21046960 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 205737 AGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTAT 205795 |||||||||||| ||||||||||| |||||||||||||||||||||||||| | |||| Sbjct 11751398 AGCACCAAAATGTCGCCATTGAAATCCATAAACTGGACCTAAATCACCTTCCTCCCTAT 11751340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455886681600