Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq11 93.3 3e-14 seq12 82.4 6e-11 >seq11 Length=21046960 Score = 93.3 bits (102), Expect = 3e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 || || || ||||||||||| || |||||||||||||| |||||||| ||||| |||||| Sbjct 11751901 TCATGCCAGATGTATCAACGCTCTGCTGATATGGGACTTGGTGTTCCATTCAACATTGCA 11751960 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTT 20553 ||| | || || ||||| |||||||| || ||| Sbjct 11751961 TCATATTCTCTTCTGACGTACATGATTGCTCAAGTT 11751996 >seq12 Length=17761961 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20430 CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATAT 20489 ||| ||||| |||| ||| || || || || || ||||||||||| || |||||||| Sbjct 9973100 CCAGTTTTATGTTGAGAATGGGGAGTTATCATGCCAGATGTATCAACGTTCTGCTGATAT 9973159 Query 20490 GGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 ||| || || || || ||||| |||||| || | || || || | |||||||||||| Sbjct 9973160 GGGGCTTGGGGTACCATTCAACATTGCATCATACTCTCTTCTGACTTGTATGATTGCACA 9973219 Query 20550 TGT 20552 || Sbjct 9973220 AGT 9973222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399183941619340