Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq6 114 3e-20 seq2 93.3 9e-14 seq7 91.5 3e-13 >seq6 Length=21016138 Score = 114 bits (126), Expect = 3e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 157274 TTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTTG 157333 |||||||| ||||||||||| ||||| || || || | |||||||| ||||| |||||| Sbjct 6617792 TTCTCAAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGGTTG 6617851 Query 157334 GCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAGTCCGCCACAAACTTG 157393 ||| |||||||| ||| | | | || ||| | ||| || ||| || || |||| | Sbjct 6617852 GCGACGTTGTACATCTTCTTGCAGCCGAGCGCCATGAGCAAGCGGTCGGCGACGAACTCG 6617911 Query 157394 ATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGACGGGAAGCGC 157446 ||||||| ||||| | || | || |||| |||||||||||| ||||| Sbjct 6617912 ATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGACGGGGAGCGC 6617964 Score = 96.9 bits (106), Expect = 7e-15 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || || | ||||| |||||| || ||||||| || || ||| | || || Sbjct 2855687 GACTTTGATTATGACTACTTTGGTTTCAAGACTCTGGAGAGGTCTTACCTCTTGAAGCTT 2855628 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | ||||||| |||| || | ||||||||||| ||| |||| | || ||||| ||| Sbjct 2855627 GGTGGCAAGGTCGTTGAGAGGCCACAGCACATGTTAATGAGAGTTTCAGTGGGGATACAC 2855568 Query 248929 AAGGATGACATAGAGAGCGTGC--TCGAGACGTA-CACCGGAATGAGTGAACGCTGGATG 248985 ||||||||||| ||| || ||| || | || || || | | ||| | |||| ||| | Sbjct 2855567 AAGGATGACATTGAG-GC-TGCTATCAAAACCTACCATCTG-ATGTCTCAACGATGGTTT 2855511 Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 || ||||| | || || || |||||| | || || Sbjct 2855510 ACTCATGCTTCGCCAACCCTTTTCAACTCTGGCAC 2855476 >seq2 Length=26406337 Score = 93.3 bits (102), Expect = 9e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 248800 TACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTC 248859 |||| || |||||| || || || | || | ||| || || || |||| ||| ||||| Sbjct 25078014 TACGACAGAGATTTTGACTATGACTATTTCGGTTTTAAGACCCTTGAGAGATCATATCTG 25078073 Query 248860 CTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTC 248919 | ||| ||| || ||| | |||||| || ||||| ||| | ||| |||| || | Sbjct 25078074 TTGAAAGTTGGCGGAAAGGTTGTGGAAAGACCACAGCAGATGCTAATGAGAGTTTCTATT 25078133 Query 248920 GGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGC 248979 ||||| ||||||||||| || ||| | | || | || ||| | ||| | | ||| Sbjct 25078134 GGGATACACAAGGATGATATTGAGTCTGCGATCAAAACATACCACATGATGTCTCAGCGC 25078193 Query 248980 TGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||| | || ||||| |||| || || ||||| || || || Sbjct 25078194 TGGTTTACCCATGCTTCACCAACCCTTTTCAATGCTGGCAC 25078234 >seq7 Length=22540073 Score = 91.5 bits (100), Expect = 3e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 157274 TTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTTG 157333 ||||| || ||||||||||| ||||| || || || | |||||||| ||||| ||||| Sbjct 17338007 TTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAAGGGGTTA 17337948 Query 157334 GCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAGTCCGCCACAAACTTG 157393 | ||||||| ||| | | | |||||| | ||| || || || ||||||| | Sbjct 17337947 ACAACATTGTACATCTTCTTGCAGCCCAGCGCCATGAGCAAGCGATCAGCGACAAACTCG 17337888 Query 157394 ATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGACGGGAAGCGC 157446 ||||||| |||| || | || | || || | |||||||||||| || || Sbjct 17337887 ATGTACTGGCTCATCAGCTCCCCGTTCATCCCAACGAGCGCGACGGGGAGTGC 17337835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766234908416