Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1 125 6e-24 seq2 120 2e-22 seq5 118 8e-22 seq6 100 2e-16 seq9 98.7 8e-16 >seq1 Length=32922458 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| || ||||||||| |||||||||||| || ||| | || ||| Sbjct 9819693 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCC 9819634 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| ||||| || || | |||||||||||| Sbjct 9819633 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGG 9819574 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| ||||||||||| || |||||||| Sbjct 9819573 ATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTC 9819514 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||||||| |||||||| ||||| ||||| || Sbjct 9819513 CCCGTCAGGGTCTTCACGAAGATCTGCATCTT 9819482 >seq2 Length=26406337 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||||| ||||| || || | ||| |||| ||| Sbjct 20340249 ACCAAGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAATGTGCGCCCGTCCTCC 20340308 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | || ||| ||||| || || | |||||||||||| Sbjct 20340309 AGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 20340368 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 |||||| |||||| | | |||| | ||||||||||| || || |||||| Sbjct 20340369 ATTTTTGCCTTAACATTGTCAATTGTGTCGGAGCTCTCCACCTCCAGAGTTATGGTCTTG 20340428 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||||||||||||||| ||||| Sbjct 20340429 CCGGTAAGAGTCTTCACAAAGATCTGCAT 20340457 Score = 109 bits (120), Expect = 4e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| || || |||| ||||| || Sbjct 2676587 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCCAGCTG 2676646 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || |||| ||||| ||||| || || | |||||||||||| || || Sbjct 2676647 CTTGCCGGCAAAAATCAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTT 2676706 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||||||||| | ||| || |||||||| || Sbjct 2676707 GGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCAGT 2676766 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || |||||||| ||||| |||||| Sbjct 2676767 GAGGGTCTTCACGAAGATCTGCATG 2676791 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || | |||| ||||| || || ||||| || Sbjct 2677055 CTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAA 2677114 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| ||||| || || | |||||||||||| || || ||| || Sbjct 2677115 GATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 2677174 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | ||||||||| | ||| || |||||||| ||||||||||| || Sbjct 2677175 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTGAC 2677234 Query 45325 AAAGATTTGCATG 45337 |||||| |||||| Sbjct 2677235 AAAGATCTGCATG 2677247 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| || ||| | || ||| Sbjct 2676354 ACCAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCC 2676413 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| ||||| || || | |||||||| ||| Sbjct 2676414 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATCCCCTCCTTATCCTGT 2676473 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||||| || || ||||| Sbjct 2676474 ATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCAACCTCCAGAGTGATGGTCTTC 2676533 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||| ||||| Sbjct 2676534 CCAGTCAAGGTCTTGACGAAGATCTGCAT 2676562 >seq5 Length=20807039 Score = 118 bits (130), Expect = 8e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| || ||| |||| || || || Sbjct 2856310 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTG 2856369 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| || | ||||| ||||| || || | |||||||||||| || || Sbjct 2856370 CTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTT 2856429 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| ||||||||||| || || ||||| ||||| Sbjct 2856430 GGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGT 2856489 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||| |||||||| ||||| ||||| ||| Sbjct 2856490 CAGGGTCTTCACGAAGATCTGCATCTTG 2856517 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||||||||||||||| || || | || ||| Sbjct 16644175 ACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCGAGAGTACGGCCATCCTCC 16644116 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| ||||| || || | |||||||||||| Sbjct 16644115 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 16644056 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| ||| ||||| | ||||| |||||| Sbjct 16644055 ATCTTCGCCTTCACATTGTCGATCGTGTCTGATGACTCAACCTCGAGTGTAATGGTCTTG 16643996 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||| ||||| ||||| Sbjct 16643995 CCAGTAAGGGTCTTCACGAAGATCTGCAT 16643967 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || |||||| ||||||||| ||||||||||| || ||| | || || | Sbjct 16643718 CAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGCCCATCTTCGA 16643659 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || ||||| || || | ||||| ||||| || || | |||||||| ||| | Sbjct 16643658 GCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGA 16643599 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | ||||| ||| ||||| | ||| || ||||||| Sbjct 16643598 TCTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTTATGGTCTTGC 16643539 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || ||||||||||||||||| ||||| Sbjct 16643538 CAGTGAGAGTCTTCACAAAGATCTGCAT 16643511 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||| ||| ||||||||| |||||||| || || ||| | || ||| Sbjct 6507218 ACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCCAAGGTGCGGCCATCCTCC 6507277 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || ||||| | ||||| ||||| || || | |||||||||||| | Sbjct 6507278 AGCTGCTTGCCAGCAAATATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGA 6507337 Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || ||| ||| | || | || | |||| ||| ||||| | ||||| || || Sbjct 6507338 ATCTTTGCCTTCA-CGTTGTCAATCGTGTCTGACGACTCAACCTCTAGCGTAATGGTTTT 6507396 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||| ||||| |||||||||||||| Sbjct 6507397 GCCGGTCAATGTCTTGACAAAGATTTGCAT 6507426 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||| || || | | || || || || Sbjct 16643942 GTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCCTGCCATCCTCGAGCTG 16643883 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| ||||| ||||| || || | |||||||||||| ||| || Sbjct 16643882 CTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTT 16643823 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | ||| || | | | | || | ||||||||| | ||| || |||||||| || Sbjct 16643822 TGCCTTGACATTGTCAATGGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCAGT 16643763 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| || |||||||||||| Sbjct 16643762 CAAGGTCTTAACGAAGATTTGCATG 16643738 >seq6 Length=21016138 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| || | || | || | ||| || ||| ||||||||| |||||||||||| Sbjct 18969548 GCCACCCCTGAGCCTGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 18969489 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || || || || || || ||||| || | ||||| ||||| || || Sbjct 18969488 CAAGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGG 18969429 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || ||| || | | | ||||| ||| || Sbjct 18969428 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCAAC 18969369 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| || |||||||| || || |||||||||||||| ||||| Sbjct 18969368 CTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 18969321 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| || | || | |||| ||| || || ||||||||| ||||||||||| Sbjct 18970231 CCACCCCTGAGCCTGAGAACCAGGTGGAGGGTAGACTCCTTCTGNATGTTGTAGTCAGCA 18970172 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| ||||| || || ||||| || || | ||||| ||||| || || Sbjct 18970171 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGA 18970112 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCAC 45288 | |||||||||||| | | || |||| | || | || | ||||| ||| || Sbjct 18970111 ATGCCCTCCTTGTCCTGGA-TCTTGGCTTTAACGTTGTCAATCGTGTCCGAGGACTCGAC 18970053 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | || || |||||||| ||||| ||||| || ||||| ||||| Sbjct 18970052 CTCAAGCGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 18970005 >seq9 Length=15534364 Score = 98.7 bits (108), Expect = 8e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||||||||||||||| |||| ||| | || ||| Sbjct 9034756 ACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGCCAGTGTGCGTCCATCCTCC 9034697 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 | ||| || || || |||||||| |||||||| || ||||| | ||| ||||||||| Sbjct 9034696 AATTGCTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTGTCC 9034640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075142220252