Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2 105 7e-18 seq5 102 8e-17 seq6 89.7 5e-13 seq4 86.0 6e-12 >seq2 Length=26406337 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || || || || ||||| || ||||| || ||||| | ||| || Sbjct 20340249 ACCAAGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAATGTGCGCCCGTCCTCC 20340308 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || |||||| |||| || | ||||| || || || ||||| || ||||| | Sbjct 20340309 AGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 20340368 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 |||||| || | | || | |||||||| | ||||||||| | || | |||||| Sbjct 20340369 ATTTTTGCCTTAACATTGTCAATTGTGTCGGAGCTCTCCACCTCCAGAGTTATGGTCTTG 20340428 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| | || || || || || |||||| || Sbjct 20340429 CCGGTAAGAGTCTTCACAAAGATCTGCATACCT 20340461 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | || || || || ||||| || ||| Sbjct 2677278 GTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCA 2677337 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| ||||| || || || ||||| || || || ||| || || Sbjct 2677338 GCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTAGCCTTG 2677397 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || ||||||||||| ||| | |||||||||||||| || Sbjct 2677398 ACGTTGTCAATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAATGTC 2677457 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 2677458 TTCACGAAGATCTGCAT 2677474 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || ||||| || || ||||| || || | || || Sbjct 2676803 ACGCAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTCCTGCC 2676862 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| || ||||| || || || |||| ||||| ||||| || || || ||||| || || Sbjct 2676863 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTT 2676922 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | ||||||| | ||||||||||| ||| | Sbjct 2676923 GTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGAT 2676982 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || ||||| || ||||| Sbjct 2676983 GGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 2677018 >seq5 Length=20807039 Score = 102 bits (112), Expect = 8e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| || || ||||| ||||| | || || || |||||||| Sbjct 16643942 GTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCCTGCCATCCTCGAGCTG 16643883 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| |||||||||| ||||| || || || || || || ||||| ||| | | Sbjct 16643882 CTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC-TGAATCT 16643824 Query 139681 TTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 ||| || | | || || | || | | ||||||||||| ||| | |||||||| | Sbjct 16643823 TTGCCTTGACATTGTCAATGGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCAG 16643764 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 |||| || || ||||| |||||||| Sbjct 16643763 TCAAGGTCTTAACGAAGATTTGCAT 16643739 >seq6 Length=21016138 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || || || || || ||||| ||||| | |||| || || Sbjct 18970441 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCATCCTCC 18970382 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| ||||||||| |||||||||| ||||| || || || ||||| || ||||| | Sbjct 18970381 AGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGG 18970322 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | ||||| | || ||| ||||| | ||| | |||||| Sbjct 18970321 ATCTTGGCCTTCACATTGTCAATAGTGTCAGAGGACTCAACCTCCAGGGTGATGGTCTTG 18970262 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || || ||||| || ||||| Sbjct 18970261 CCGGTAAGGGTCTTCACGAAGATCTGCAT 18970233 >seq4 Length=23326293 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| || || ||||||||||| || | |||| || || ||||| || ||| Sbjct 20245404 GTAGATTCCTTCTGAATGTTATAGTCAGCAAGAGTGCGGCCATCCTCCAGCTGCTTGCCA 20245345 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| ||||| || || || || ||||| ||||| ||| || || Sbjct 20245344 GCAAAGATAAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATCTTGGCCTTC 20245285 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| | || ||| ||||| | ||| | |||||||| || | || Sbjct 20245284 ATGTTGTCAATTGTGTCAGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTC 20245225 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 20245224 TTCACGAAGATCTGCAT 20245208 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | |||| || | ||| | || || || || ||||||||||| | | Sbjct 20244978 CCGCCACGGAGGCGCAGGACAAGGTGCAGGGTGGATTCCTTCTGAATGTTATAGT--CCA 20244921 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || |||||||| || |||||| |||| || | ||||| || ||||| Sbjct 20244920 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGGTGCTGCTGGTCCGGAGGG 20244861 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| | || | || | | || | ||||||| || ||| || Sbjct 20244860 ATGCCCTCCTTGTC-CTGAATCTTAGCCTTCACATTGTCAATCGTGTCGGAGGACTCTAC 20244802 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||||| || | || || ||||| || ||||| Sbjct 20244801 CTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAAATCTGCAT 20244754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063925590400