Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 107 3e-18 seq2 87.8 3e-12 >seq6 Length=21016138 Score = 107 bits (118), Expect = 3e-18 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| ||||||||||| | || || |||||||| || |||||| Sbjct 6618062 CAGGCGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGT 6618121 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| |||||||||||||| ||||| || |||| |||| || || || || ||||| Sbjct 6618122 CCCGGCATGAGGCCACGCTTTTTCAGCCAGAAGATGG-CGCAGAACGAGCCCGAGAAGAA 6618180 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138 || || || || ||| || || || || | ||| | | | ||| | | | || Sbjct 6618181 AATCCCCTCGACGCAGGCGAATGCCACGAGGCGCTCGGCGAAGCGCTCGCCGCCGTCGAT 6618240 Query 50139 CCA-CTTTTGAGCCCAATCGGCCTT 50162 ||| | || |||||||||||||| Sbjct 6618241 CCATCGCATG-GCCCAATCGGCCTT 6618264 Score = 100 bits (110), Expect = 4e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 80344 ttAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 80403 || || | ||| || ||||| || ||||||||| || ||||| |||| ||| || | Sbjct 2855485 TTGAAAAGGGTTGGCGAAGCATGAGTAAACCATCGTTGAGACATCAGATGGTAGGTTTTG 2855544 Query 80404 ATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTG 80462 ||||| | || || || | ||| || || || || | || | ||||||||||||||| Sbjct 2855545 ATAGCAGCCTCAATGTCATCCTTG-TGTATCCCCACTGAAACTCTCATTAACATGTGCTG 2855603 Query 80463 AGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAA 80522 || || ||||||| |||| | | ||||| | |||||| | |||| ||| || || Sbjct 2855604 TGGCCTCTCAACGACCTTGCCACCAAGCTTCAAGAGGTAAGACCTCTCCAGAGTCTTGAA 2855663 Query 80523 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||| |||| || |||||| | || ||||| || Sbjct 2855664 ACCAAAGTAGTCATAATCAAAGTCCCTATCATAAATTAT 2855702 >seq2 Length=26406337 Score = 87.8 bits (96), Expect = 3e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 79428 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 79487 ||| || | |||||| || |||||||||||||| ||||| || ||||| ||| |||| || Sbjct 25079750 AATGAAAGTGTCTGCCAAGCCTTGAACACCAATTCCGATTGGCCTATGCCTCATATTTGA 25079691 Query 79488 AATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCC 79543 | | || ||| || ||| ||| |||||||||| || ||||| |||||||||| Sbjct 25079690 TCTCTTTGCAGTCT-CAACAGGGTAAAAATTAATATCAATTATTTTGTTGAGATTCC 25079635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268692259680