Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 172 8e-38 seq7 165 1e-35 >seq6 Length=21016138 Score = 172 bits (190), Expect = 8e-38 Identities = 397/587 (68%), Gaps = 21/587 (4%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| |||||| |||| | | || ||||| | ||||| ||||| ||| || || | Sbjct 6618638 TGTTCCCCATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCT 6618579 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACT-CG-TTTGAC 125113 |||||| || |||||||| || ||| ||| | | | ||||| || || ||| || Sbjct 6618578 GGACGGCGGAGGAGGTCGACCTCTCCGGCGACGCGCGCCACTGGGACACGACGCTTTCAC 6618519 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || ||||| | || || || ||| | | |||||||| || | ||||| ||||| Sbjct 6618518 CCAAC--GAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCGGCGTCCGACGGAAT 6618461 Query 125174 CGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGT 125232 ||| ||| || || | | | ||| | || || || | | |||| | | Sbjct 6618460 CGTGCTCGAGAACCTCGCGTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCGAGGG 6618402 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 || ||||| ||||| ||| || |||||| | |||||||| |||||||| ||| Sbjct 6618401 CATTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGC 6618342 Query 125293 TTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAATCGAC 125348 | || | ||||| ||||| | |||| || || ||||| ||| |||||| Sbjct 6618341 TCGAGACCTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAC 6618286 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || || || | | || ||||| | |||| || || |||||||| | || | || Sbjct 6618285 ACCGTCCCCGCCGTCCGCCGCAAGGCCGATTGGGCCATGCGATGGATCGACGGCGGCGAG 6618226 Query 125409 T-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||||| |||| | || |||||||||||| ||| ||||| || ||||| ||||| Sbjct 6618225 CGCTTCG----CCGAGCGCCTCGTGGCATTCGCCTGCGTCGAGGGGATTTTCTTCTCGGG 6618170 Query 125468 -TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 | ||| ||| |||||||| ||||| || ||||| || |||||||| ||||| || | Sbjct 6618169 CTCGTTCTGC-GCCATCTTCTGGCTGAAAAAGCGTGGCCTCATGCCGGGACTCACTTTCT 6618111 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||| | || || || |||||||| || ||||| ||||| ||| Sbjct 6618110 CCAACGAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCC 6618064 >seq7 Length=22540073 Score = 165 bits (182), Expect = 1e-35 Identities = 380/562 (68%), Gaps = 19/562 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| | ||||| ||||| ||| || || ||||||| || |||||||| || Sbjct 17337184 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGGAGGTCGACCTC 17337243 Query 125079 TCCAAGGACCTGTACGATTGGGAGAC-TCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||| ||| | | | ||||| || || | | || ||||| | || | || Sbjct 17337244 TCCGGCGACGCGCGCCACTGGGACACCTCCCTCTCCCCGGAC-GAGCGTCACTTCGTGTC 17337302 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 ||| | | |||||||| |||| |||||| || |||||| ||| || || | | | Sbjct 17337303 CCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCGTCCAG 17337362 Query 125198 ATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 ||| | || || || | | |||| | | || ||||| ||||| ||| | Sbjct 17337363 GTTCATGTCC-GACGTGCAGGTCGCCGAGGCGAGGGCGTTCTACGGCTTCCAGATCGCCA 17337421 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGC 125316 | |||||| | |||||||| |||||||| ||| | || | ||||| ||||| | Sbjct 17337422 TCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGA----C 17337477 Query 125317 AACGT----AAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAG 125372 |||| || || ||||| ||| |||| ||| || ||| | | || ||| Sbjct 17337478 GACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGTCACCGTCCCGGCCGTCCGCCGCAAG 17337537 Query 125373 GCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-CTTCGTACGCCGACAGACTGGT 125431 || | |||| ||| || |||||||| | || | || ||||| |||| | || || Sbjct 17337538 GCCGACTGGGCGATGCGCTGGATCGACGGCGGCGAGCGCTTCG----CCGAGCGGCTCGT 17337593 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGC 125490 || |||||| ||| ||||| |||||||| ||||| | || |||| ||||||| |||| Sbjct 17337594 CGCGTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGC 17337652 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||||||||| |||||||||||||| || || | |||||| | || || || |||| Sbjct 17337653 TCAAGAAGCGTGGACTCATGCCCGGGCTCACCTTCTCCAACGAGCTCATCTCCCGCGACG 17337712 Query 125551 AGGGCCTACACTGTGACTTTGC 125572 |||| || ||||| ||||| || Sbjct 17337713 AGGGGCTCCACTGCGACTTCGC 17337734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059088841120