Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 1e-13 >seq5 Length=20807039 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||||||||| ||| | || | || || | || Sbjct 16643941 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCCTGCCATCCTCGAGCTGC 16643882 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 |||||||| | |||| ||| || ||||| |||||||| || ||||| ||| ||| Sbjct 16643881 TTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTTT 16643822 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || |||||||| | || || || | ||| || || || || || Sbjct 16643821 GC-CTTGACATTGTCAATGGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCAGT 16643763 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || |||||||| Sbjct 16643762 CAAGGTCTTAACGAAGATTTGCAT 16643739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362179147031292