Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 4e-13 seq5 86.0 5e-12 >seq2 Length=26406337 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| || || ||||| || || | || || ||||||||||||| || || Sbjct 2677050 GTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCG 2677109 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || | |||||| || ||| | |||||| ||||| || || || Sbjct 2677110 GCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 2677169 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| || ||| || |||| |||| ||| ||||| || || || | ||| Sbjct 2677170 ACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTC 2677229 Query 19025 TTGACAAAAATTTGCAT 19041 |||||||| || ||||| Sbjct 2677230 TTGACAAAGATCTGCAT 2677246 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||||||||| ||||| |||||||| |||| ||| |||| ||| Sbjct 20340477 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCCAATGTGCGCCCGTCTTCC 20340536 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 |||||||| || ||| | || || ||||||||||| Sbjct 20340537 AGCTGTTTCCCAGCAAATATTAGCCTCTGCTGATC 20340571 >seq5 Length=20807039 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | || ||| | || | ||| | || || ||||| |||||||||||||| ||| Sbjct 6507656 CCTCCCCTCAGCCTAAGAACAAGGTGAAGAGTGGATTCCTTCTGAATATTGTAATCTGCC 6507715 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||| ||||| || || || | ||||| | ||||||||| ||| Sbjct 6507716 AACGTCCGACCATCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGGGGA 6507775 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGT 18993 | |||||| ||||| |||||| || || | | ||| || || | ||| ||| Sbjct 6507776 ATGCCCTCCTTGTCCTGGATTTTCGCCTTCACGTTGTCGATCGTGTC-CGAGGACTCGAC 6507834 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || ||||| || ||||| || || || ||||| || |||||| Sbjct 6507835 CTCCAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCATT 6507883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414572739368728