Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 >seq3 Length=29602667 Score = 127 bits (140), Expect = 2e-24 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| ||||| || || | || || | || |||| ||| | ||||||| Sbjct 21025334 ACGCCGGTGGATCCGAACCCTCCCTCACCCCTGACGGTGGCGTCGAGGTCCTCCACCTCG 21025275 Query 5561 TCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || || | | | | | |||| ||||| |||||| || | |||||| | ||| Sbjct 21025274 GCGACCTCCGGCGTCACGATCAC-CTCGATGATCATCTGCGCGATCCTGTCGCCGGGCTT 21025216 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 ||| |||| ||| || | | ||||||||| | || ||||| |||||||||||| Sbjct 21025215 CACCACGAAGTCGACGTCGGAGTGGTTGAACAGTATGACCCCCACCGGGCCGCGGTAGTC 21025156 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 |||||| ||||| || |||||||||||||| ||||||| | |||||| || || Sbjct 21025155 GGCGTCGATCACTCCGGCGCCCACGTCGATCGAGTGCTTCAGCGCCAGCCCCGA 21025102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430054337104544