Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 seq6 100 2e-16 seq5 87.8 2e-12 >seq2 Length=26406337 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| ||||| ||||| ||||||||||||||| ||| |||||||| Sbjct 20340249 ACCAAGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAATGTGCGCCCGTCCTCC 20340308 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || | | || | | |||||| || ||| | | ||||||||| Sbjct 20340309 AGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 20340368 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||| | | | || || |||| |||| ||| | |||||||| || Sbjct 20340369 ATTTTTGCCTTAACATTGTCAATTGTGTCGGAGCTCTCCACCTCCAGAGTTATGGTCTTG 20340428 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||||| |||||||| |||||||| Sbjct 20340429 CCGGTAAGAGTCTTCACAAAGATCTGCAT 20340457 Score = 104 bits (114), Expect = 2e-17 Identities = 144/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCG 48592 |||||| || |||||||| ||||| || ||| || |||||||||||||||| ||| | Sbjct 2677055 CTCCTTCTGGATGTTGTAGTCAGC-AAGGGTC-CTGCCGTCCTCCAGCTGCTTGCCGGCA 2677112 Query 48593 TAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA-- 48650 | || | ||||||||| || || | | ||||||||| || || ||||| Sbjct 2677113 AAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 2677172 Query 48651 TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTT 48710 | | || ||||| |||| ||||||| ||||| || ||||| || ||||| ||||| | Sbjct 2677173 TTGTCG--ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCT 2677230 Query 48711 TCACAAAAATCTGCAT 48726 | ||||| |||||||| Sbjct 2677231 TGACAAAGATCTGCAT 2677246 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCG 48592 |||||| || |||||||| ||||| | ||| || |||||||||||||||| ||| || Sbjct 2676827 CTCCTTCTGGATGTTGTAGTCAGCGAGG-GTC-CTGCCGTCCTCCAGCTGCTTGCCGGCG 2676884 Query 48593 TAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATA 48652 | || | ||||||||| ||| || | | ||||||||| || || ||||| | Sbjct 2676885 AAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACA 2676944 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || || |||| ||||||| ||| | || ||||| || || || ||||| ||| Sbjct 2676945 TTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTC 2677004 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 2677005 ACGAAGATCTGCAT 2677018 >seq6 Length=21016138 Score = 100 bits (110), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 10/213 (5%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || ||||| ||||| || || || || | ||||| ||||| Sbjct 18552753 TGTAGGGTGGACTCCTTCTGGATGTTATAATCTGC-AAGGGTGCGACCATCCTCAAGCTG 18552811 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| | | | || |||||||||||||||| || | | |||||||||| || || Sbjct 18552812 CTTTCGAGCAAAGATCAAACGCTGCTGATCCAGTGGAATGCCTTCCTTGTCCTGGATCTT 18552871 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACT--------GTTATGGTT 48694 ||||| | | || ||||| | ||||| ||| ||| || |||||| Sbjct 18552872 GGCCTTGACATTGTCAATTGTATCTGAGGACTCAACCTCAACTCCTCAAGGGTGATGGTT 18552931 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||||||||| |||||||||||||||||| Sbjct 18552932 TTCCCGGTGAGAGTCTTCACAAAAATCTGCATC 18552964 >seq5 Length=20807039 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||||||||||| |||| ||| || || ||||||| |||||||| ||| | | Sbjct 6507464 TCCTTTTGAATGTTGTAGTCAG-CAAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCAAA 6507522 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| || || | | |||||||||| ||| ||| ||| | Sbjct 6507523 GATGAGGCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTCGCCTTCACGTT 6507582 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || || | ||||| ||| | ||| ||||| || || || || || || || Sbjct 6507583 ATCGATTGTGTCTGACGACTCAACCTCAAGTGTAATGGTCTTGCCTGTCAGGGTCTTGAC 6507642 Query 48715 AAAAATCTGCAT 48726 |||||||||||| Sbjct 6507643 AAAAATCTGCAT 6507654 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || ||| | || | ||||| ||| ||||| ||||| |||||||| ||| Sbjct 6507656 CCTCCCCTCAGCCTAAGAACAAGGTGAAGAGTGGATTCCTTCTGAATATTGTAATCTGCC 6507715 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||| |||||||| || || | || | |||||||||||| || Sbjct 6507716 AACGTCCGACCATCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGGGGA 6507775 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | ||||||||| |||||| ||| | | | || || || || | ||||| Sbjct 6507776 ATGCCCTCCTTGTCCTGGATTTTCGCCTTCACGTTGTCG--ATCGTGTCCGAGGACTCGA 6507833 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || | || |||||||| |||||||| Sbjct 6507834 CCTCCAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 6507882 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || ||| |||||| ||||||||||| || || | || | ||||| Sbjct 16644176 CACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCGAGAGTACGGCCATCCTC 16644117 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || | || | |||||||| || || | | ||||||||| Sbjct 16644116 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 16644057 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || ||| ||| | | | || || || | ||||| ||||| ||| ||||| || Sbjct 16644056 GATCTTCGCCTTCACATTGTCGATCGTGTCTGATGACTCAACCTCGAGTGTAATGGTCTT 16643997 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||| || |||||||| Sbjct 16643996 GCCAGTAAGGGTCTTCACGAAGATCTGCAT 16643967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251138392012