Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2 116 2e-21 seq5 114 7e-21 seq1 113 2e-20 seq12 107 1e-18 seq10 107 1e-18 seq11 105 3e-18 seq9 105 3e-18 seq3 105 3e-18 seq4 104 1e-17 seq8 100 1e-16 seq7 98.7 5e-16 >seq2 Length=26406337 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 15721408 AAAAAATAAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 15721349 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 15721348 GCTCTAACCAACTGAGCTAATAGGCC 15721323 >seq5 Length=20807039 Score = 114 bits (126), Expect = 7e-21 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| |||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 15438272 AATAAAAAAG--AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 15438329 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||| |||| |||||||||| |||||| Sbjct 15438330 GACGCTCTAACCAGCTGAGCTAATAGGCCGT 15438360 >seq1 Length=32922458 Score = 113 bits (124), Expect = 2e-20 Identities = 81/94 (86%), Gaps = 4/94 (4%) Strand=Plus/Minus Query 11436 GAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||| ||| ||||||| |||||||||| | | |||||||| |||||||||||||||| Sbjct 29477234 GAAATAAGAAAAAAT----TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATT 29477179 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| ||||||||||||||| |||| Sbjct 29477178 AGCACGACGCTCTAACCAACTGAGCTAATAGGCC 29477145 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 18642055 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 18642114 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 18642115 CAGCTGAGCTAATAGGCC 18642132 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 25832878 AACAAAAAAAAAACATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 25832819 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 25832818 GACGCTCTAACCAGCTGAGCTAATAGGCC 25832790 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 32699634 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 32699693 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 32699694 TGAGCTAATAGGCC 32699707 >seq12 Length=17761961 Score = 107 bits (118), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| |||| |||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 60548 AAAAAAGAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 60606 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 60607 CTCTAACCAACTGAGCTAATAGGCC 60631 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 27899 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 27958 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 27959 CTGAGCTAATAGGCC 27973 >seq10 Length=15557830 Score = 107 bits (118), Expect = 1e-18 Identities = 77/89 (87%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| | |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 11263940 AATAAAAAAAC---TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 11263884 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 11263883 GACGCTCTAACCAGCTGAGCTAATAGGCC 11263855 >seq11 Length=21046960 Score = 105 bits (116), Expect = 3e-18 Identities = 75/86 (87%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 295966 AAAAAAGTAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 295909 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 295908 GCTCTAACCAACTGAGCTAATAGGCC 295883 >seq9 Length=15534364 Score = 105 bits (116), Expect = 3e-18 Identities = 75/86 (87%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 11591077 AAAAAT---ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 11591021 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| |||| |||||||||| ||||| Sbjct 11591020 CTCTAACCAGCTGAGCTAATAGGCCG 11590995 Score = 104 bits (114), Expect = 1e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 8618714 AAAAAAAGAGGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 8618773 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 8618774 GCTCTAACCAGCTGAGCTAATAGGCC 8618799 >seq3 Length=29602667 Score = 105 bits (116), Expect = 3e-18 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 12598011 AAAAACCATTCTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 12598070 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 12598071 CTCTAACCAACTGAGCTAATAGGCC 12598095 >seq4 Length=23326293 Score = 104 bits (114), Expect = 1e-17 Identities = 75/87 (86%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 15107991 AAAAAAGCA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 15108047 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| |||| |||||||||| ||||| Sbjct 15108048 GCTCTAACCAGCTGAGCTAATAGGCCG 15108074 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 13357287 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 13357228 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 13357227 TGAGCTAATAGGCC 13357214 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 14673692 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 14673751 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 14673752 TGAGCTAATAGGCC 14673765 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 15239943 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 15239884 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 15239883 TGAGCTAATAGGCC 15239870 >seq8 Length=20165712 Score = 100 bits (110), Expect = 1e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||| | ||||||||||||||||||||||||||||| || Sbjct 13994908 AAAATGGCCCATGCAGGTCTCGAACATGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 13994967 Query 11512 CAACTGAGCTAATGGGCCG 11530 |||||||| |||| ||||| Sbjct 13994968 CAACTGAGATAATAGGCCG 13994986 >seq7 Length=22540073 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || |||| |||| | | || ||||| |||||||||||||||||||||||| Sbjct 19561717 AAAAAATAAATCTGGCTCATGCAGGTCTCTAACCTGCGACCTTCGCGTTATTAGCACGAC 19561658 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 19561657 GCTCTAACCAGCTGAGCTAATAGGCC 19561632 Lambda K H 0.639 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261491161756912