Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4 132 8e-27 seq1 127 3e-25 seq5 123 4e-24 seq7 120 5e-23 seq2 120 5e-23 seq10 116 6e-22 seq9 114 2e-21 seq3 111 2e-20 >seq4 Length=23326293 Score = 132 bits (146), Expect = 8e-27 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || ||||| | ||||| | | || ||| Sbjct 18080508 CGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGCGGA 18080449 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 |||||||| |||| || || |||| || |||| || | || | |||||||||||| Sbjct 18080448 GTCAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTC 18080389 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| || || || ||| ||||||||||| || ||||| |||||| Sbjct 18080388 GAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACC 18080329 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||||||| ||||||| || | || || || ||||| Sbjct 18080328 GCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 18080291 >seq1 Length=32922458 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | ||||||| || || || |||||||| || ||||||||||| || || Sbjct 26482403 CGCGAAGAGGCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 26482462 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || || |||| || |||| Sbjct 26482463 CCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGAC 26482522 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| || || Sbjct 26482523 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACAGA 26482582 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| |||||||| ||||||| || | || || || || Sbjct 26482583 GCACGCCCGCCGCAAGACCGTCACCGCCATGGATGTCGTCTACGCCCTCAAGCGCCAGGG 26482642 Query 16672 CCG 16674 ||| Sbjct 26482643 CCG 26482645 >seq5 Length=20807039 Score = 123 bits (136), Expect = 4e-24 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || || || | | ||| Sbjct 14866659 CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGCCTTGCGAGGAGGGGT 14866718 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||||| ||| Sbjct 14866719 GGTGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATATTC 14866778 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || ||| || ||| || |||||||| || ||||| ||| Sbjct 14866779 CTCGAGAACGTCATCCGCGACGCTGTCACCTACACGGAGCACGCCCGCCGGAAGACCGTC 14866838 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 14866839 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 14866879 Score = 116 bits (128), Expect = 6e-22 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || || |||||||| || ||||||||||| || ||| Sbjct 14864016 GCCAAGCGTCACCGGAAGGTGCTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGATC 14864075 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || || | | || || || ||||| |||| || || |||| || |||| Sbjct 14864076 CGGCGCCTTGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACC 14864135 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | |||||||||||| ||| || || | || || || ||| |||||| Sbjct 14864136 CGCGGCGTGCTCAAGATCTTCCTCGAGAATGTCATACGCGACGCCGTCACCTACACCGAG 14864195 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| |||||| ||||||| ||||||| || | || || || ||| Sbjct 14864196 CACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGC 14864255 Query 16673 CG 16674 || Sbjct 14864256 CG 14864257 Score = 107 bits (118), Expect = 3e-19 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 16464 ACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGC 16523 |||||||||| ||||||||||| || ||||| || || ||| | | || || || | Sbjct 14729131 ACATCCAAGGCATCACCAAGCCGGCGATCCGACGCCTTGCTAGGAAGGCCGGCGTGAAAC 14729072 Query 16524 GTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCG 16583 | |||| || | |||| | |||| |||| || | ||||||||||||||| | Sbjct 14729071 GCATCTCAGGGCTAATCTACAAGGAGACTCGTAGCGTGCTTGAGATCTTCCTCAAGAAAG 14729012 Query 16584 TTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGG 16643 | ||||| |||||| | |||| ||||||| ||| | || ||||| |||||| |||| Sbjct 14729011 TCATCCACGATGCTGTTATCTATGCCGAGCATGCTCACCGCAAGACCGTCACCGTTATGG 14728952 Query 16644 ATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | | ||||| || | || | || |||| | || ||||| ||||| Sbjct 14728951 ACGTTGTCTACGCTCTCAAGCAACAGGGCCACACCATCTATGGCTTTGG 14728903 >seq7 Length=22540073 Score = 120 bits (132), Expect = 5e-23 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| | ||||| | | || Sbjct 15963879 CTGCGCGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGC 15963938 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 15963939 GGGGTGAAGCGCATCTCGGGTCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 15963998 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| ||||| || ||| ||||||||||| || ||||| ||| Sbjct 15963999 CTCGAGAACGTCATCCGCGATGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 15964058 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 15964059 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 15964099 >seq2 Length=26406337 Score = 120 bits (132), Expect = 5e-23 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| | ||||| | | || Sbjct 19921113 CTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGA 19921054 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||||||||| Sbjct 19921053 GGCGTTAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 19920994 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 19920993 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 19920934 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 19920933 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 19920893 >seq10 Length=15557830 Score = 116 bits (128), Expect = 6e-22 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| | ||||| | | || Sbjct 13809996 CTGCGCGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGA 13809937 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||||||||| Sbjct 13809936 GGCGTGAAGCGCATCTCGGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 13809877 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 13809876 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 13809817 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| ||||||| || | || || || ||||| | | || ||||| || Sbjct 13809816 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGTTTCGG 13809758 >seq9 Length=15534364 Score = 114 bits (126), Expect = 2e-21 Identities = 171/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | || || || ||||| || || ||||| ||||| || || Sbjct 9625157 CGCGAAGCGTCATCGGAAGGTGCTCCGCGACAACATTCAGGGGATCACGAAGCCGGCGAT 9625216 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 9625217 CCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 9625276 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| || | || || || ||| ||||| Sbjct 9625277 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATTCGCGACGCCGTCACCTACACCGA 9625336 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 9625337 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 9625396 Query 16672 CCG 16674 ||| Sbjct 9625397 CCG 9625399 >seq3 Length=29602667 Score = 111 bits (122), Expect = 2e-20 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| | ||||| | | || Sbjct 975297 CTGCGCGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGA 975356 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||||||||| Sbjct 975357 GGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 975416 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || | ||| || |||||||| || ||||| ||| Sbjct 975417 CTCGAGAACGTCATCCGCGACGCCGTTACCTACACGGAGCACGCCCGCCGCAAGACCGTC 975476 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| ||||||| || | || || || ||||| | | || ||||| || Sbjct 975477 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGTTTCGG 975535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075189028316