Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq8 159 4e-34 seq7 132 6e-26 seq9 118 1e-21 seq5 98.7 1e-15 >seq8 Length=20165712 Score = 159 bits (176), Expect = 4e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 138687 CTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGAT 138746 || ||||| |||||||| || ||||| || || || || ||||| |||||||| |||||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 138747 CCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGG 138806 |||||||| ||||| ||||||||||| || |||||| | || || ||| | ||||| ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 138807 ATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGA 138866 ||||| || |||||| ||||| ||||| || | || ||||| || || | ||| | Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGT 4128807 Query 138867 GGCAACGCTCT 138877 || |||||||| Sbjct 4128808 GGAAACGCTCT 4128818 >seq7 Length=22540073 Score = 132 bits (146), Expect = 6e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 135470 ATTGTTGCTTTCATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCT 135529 ||| |||| |||||||| || |||| | |||||||| || || | ||| ||||| || Sbjct 5748005 ATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTCT 5748064 Query 135530 GGTTCTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCC 135589 |||| || | || ||||| || || ||||||||||| |||| ||| || || Sbjct 5748065 AATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCG 5748124 Query 135590 ATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAAT 135649 ||||| | ||||| || || || ||||||||||| ||| ||||||||| ||||| ||| Sbjct 5748125 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAAT 5748184 Query 135650 GGTGGTCCTTATCAACTA 135667 |||| ||||||| | ||| Sbjct 5748185 GGTGATCCTTATAAGCTA 5748202 Score = 118 bits (130), Expect = 1e-21 Identities = 173/235 (74%), Gaps = 16/235 (7%) Strand=Plus/Plus Query 135432 TGATGATTCCTACTCTTCTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGC 135489 ||||||| ||||| ||| | | | || || |||| |||||| | || |||||||| || Sbjct 5747382 TGATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGC 5747439 Query 135490 ACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAA 135549 ||||| || |||||||| || || ||||| |||||| |||||||| || | || ||||| Sbjct 5747440 CCCTCCAGTAGATATTGATGGTATTCGCGAGCCTGTTTCTGGTTCTTTACTTTATGGAAA 5747499 Query 135550 TAACATCATCTCTGGTGCTGTTA-TCC--CTTCTAGCAACGCCATCGGCCTTCACTTCTA 135606 ||||||| || | ||| ||| ||||| ||| | ||| | | ||||| || Sbjct 5747500 ------CATCTCTAGTTCCATTAATCCTGCTTCT-GCATCA--ATCAGATTGCACTTTTA 5747550 Query 135607 TCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTAT 135661 || | ||||| ||||| ||| ||||| || | |||| ||||||||||||||| Sbjct 5747551 CCCAAAATGGGAGGCTGCATCTGTTGATCGGTAGTTATACAATGGTGGTCCTTAT 5747605 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/172 (71%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 135467 TTTATTGTTGCTTTCATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTT 135526 |||||| |||| ||||| ||||| |||| || |||| ||| || || || || |||| | Sbjct 5748995 TTTATTATTGCCTTCATAGCTGCCCCTCAAGTAGATACTGATGGTATTCGTGAGCCTGAT 5749054 Query 135527 GCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAAC 135586 ||||||| || | | ||||| ||| ||||| |||| |||| ||| || Sbjct 5749055 TTTGGTTCTTTACTTTGTGGAAA---CATTATCTCCGGTGTCATTATTCCTACTTTTGCG 5749111 Query 135587 GCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGT 135638 || ||| | | ||||| |||| | ||||||||||| ||| || |||||| Sbjct 5749112 GCAATCAGATTGCACTTTCATCCAACTTGGGAAGCTGCATCTATTAATGAGT 5749163 >seq9 Length=15534364 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 136100 ATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTGG 136159 |||||||||||||| || |||||||||||||| ||||||| ||| | ||||||||| Sbjct 12953792 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 12953851 Query 136160 CCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAACCTCAAT 136219 ||||| || || || ||||| |||| | || | ||| ||||| |||||||| || Sbjct 12953852 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 12953911 Query 136220 GGATTCAACTTCAACCAGTC 136239 |||||||| |||||||| || Sbjct 12953912 GGATTCAATTTCAACCAATC 12953931 >seq5 Length=20807039 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 138339 TTTGGTGTGGCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACC 138398 ||||| || ||||| || || |||||| | | ||| | || || || ||||| ||||| Sbjct 7585993 TTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACG 7586052 Query 138399 CTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCT 138458 | ||||| |||||||||||||| || || || | | || | ||| |||| || ||| Sbjct 7586053 TTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTTTGCTATGCGCT 7586112 Query 138459 ATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGA 138502 |||||||| || || || ||||| ||| | | ||| || || || Sbjct 7586113 ATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGA 7586156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627967905804800