Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq9 105 2e-18 seq7 100 8e-17 seq12 98.7 3e-16 >seq9 Length=15534364 Score = 105 bits (116), Expect = 2e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 20005 TTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTC 20064 |||| |||| || || ||||||||| ||| || || |||||||||||||| ||||| Sbjct 12953781 TTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCT 12953840 Query 20065 TTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTT 20124 | ||| ||| || || || || || ||| | || | | || || | |||||||||| Sbjct 12953841 TGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTT 12953900 Query 20125 TCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT 20165 ||||||| || || || || || ||||| || ||||||||| Sbjct 12953901 TCAACCTAAACGGATTCAATTTCAACCAATCTGTAGTTGAT 12953941 >seq7 Length=22540073 Score = 100 bits (110), Expect = 8e-17 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19392 GCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCG 19451 ||||| |||||||| | || ||||||| ||||| || | ||||| || || || Sbjct 5748011 GCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTCTAATTCT 5748070 Query 19452 TTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGA 19511 ||| | || |||||||||||||| ||||| || | |||| | || || || ||| Sbjct 5748071 TTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGA 5748130 Query 19512 CTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGT 19571 |||||||||| || || |||||||| | || | ||||||| | ||| ||| || | | Sbjct 5748131 TTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAATGGTGAT 5748190 Query 19572 CCATATCAACTTGTTGTCTTCCACTTCTTA 19601 || ||| | || |||| | | ||| ||| Sbjct 5748191 CCTTATAAGCTAATTGTTCTACTCTTTTTA 5748220 >seq12 Length=17761961 Score = 98.7 bits (108), Expect = 3e-16 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 19383 TTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 19442 ||||| ||||||| |||||||| || || ||| |||| |||| || ||||||| ||| Sbjct 6069394 TTTATTATCGCCTTCATCGCAGCCCCTCCAGTACATATTGATGTTATTTGTGAGCCTGTT 6069453 Query 19443 TCCGGCTCGTTAATGTACGGAAACAATATTATTTCT-GGAGCAGTAGTTCCAAGCTCCAA 19501 || | || ||| | || |||||||||||||| ||| | | || || |||| | | Sbjct 6069454 TCTTGTTCTTTACTTTATGGAAACAATATTATCTCTAGTACCATTA-TTCCTATTTTTGC 6069512 Query 19502 TGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCG 19539 || || ||| |||||||||| | ||||||||||||| Sbjct 6069513 GGCGATCGGATTGCACTTTTAGCTAATCTGGGAAGCCG 6069550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144441579417072