Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq7 118 2e-21 seq9 95.1 2e-14 >seq7 Length=22540073 Score = 118 bits (130), Expect = 2e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 211672 GCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCA 211731 || ||||||||||| |||| | ||||| || || || | || || || || ||| Sbjct 5748011 GCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTCTAATTCT 5748070 Query 211732 TTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 211791 || | ||||| ||||| || ||||||||||| || |||| |||| || ||||| Sbjct 5748071 TTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGA 5748130 Query 211792 TTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGT 211851 || ||||| || || || |||||||| ||| || ||||||||| ||| | |||||||| | Sbjct 5748131 TTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAATGGTGAT 5748190 Query 211852 CCTTA 211856 ||||| Sbjct 5748191 CCTTA 5748195 Score = 100 bits (110), Expect = 5e-16 Identities = 171/246 (70%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 211618 TTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATT 211676 ||| ||||| | |||||||| | ||| | | | ||||| | ||||| | || || Sbjct 5747372 TTTAGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTT 5747430 Query 211677 CATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCAT 211736 ||||||||| ||||| || ||||| || || || || || || || ||||||| || | Sbjct 5747431 CATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGCGAGCCTGTTTCTGGTTCTTTACT 5747490 Query 211737 GTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACA 211796 ||||| || ||||||| || | || ||| |||| ||||| | || || Sbjct 5747491 TTATGGAAA------CATCTCTAGTTCCATTAATCCTGCTTCTGCATCAATCAGATTGCA 5747544 Query 211797 CTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTA 211856 ||| || || | ||||| || ||| || ||||| || | | ||||||||||||||||| Sbjct 5747545 CTTTTACCCAAAATGGGAGGCTGCATCTGTTGATCGGTAGTTATACAATGGTGGTCCTTA 5747604 Query 211857 CCAGTT 211862 |||| Sbjct 5747605 TGAGTT 5747610 >seq9 Length=15534364 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 212296 ATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGG 212355 |||||||| ||||| || |||||| | ||||||||||||| | || | ||| Sbjct 12953792 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 12953851 Query 212356 CCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAAT 212415 ||||| | | | ||||| || || | ||||| | || ||||| ||||||||||| Sbjct 12953852 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 12953911 Query 212416 GGATTCAACTTCAACCAATCAGTTGTTGAT 212445 |||||||| ||||||||||| || |||||| Sbjct 12953912 GGATTCAATTTCAACCAATCTGTAGTTGAT 12953941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807555078866720