Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq9 136 5e-27 seq7 89.7 6e-13 >seq9 Length=15534364 Score = 136 bits (150), Expect = 5e-27 Identities = 127/160 (79%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 171387 GATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 171446 ||||||||||||| ||||| || |||||||||||||| |||||||||||| | |||| Sbjct 12953787 GATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTG 12953846 Query 171447 TATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACC 171506 | |||||||| | | ||||| || || | ||||| |||| ||||| ||||||| Sbjct 12953847 CTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACC 12953906 Query 171507 TTAACGGATTCAACTTCAACCAATCAGTTGTAGAT-GCAA 171545 | ||||||||||| ||||||||||| || || ||| |||| Sbjct 12953907 TAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCAA 12953946 >seq7 Length=22540073 Score = 89.7 bits (98), Expect = 6e-13 Identities = 170/247 (69%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 170761 CATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGC 170820 |||| | || |||||||| || ||||| | ||||| || || || || || || | Sbjct 5748004 CATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTC 5748063 Query 170821 GGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGC 170880 |||||| | ||||| ||||| || ||||||||||| | |||| |||| || Sbjct 5748064 TAATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGC 5748123 Query 170881 AATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAA 170940 || ||||| ||||| || || || |||||||| || || | || |||| | | | ||| Sbjct 5748124 GATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAA 5748183 Query 170941 CGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTAT-TGGAATCTCTGC--CTACAT 170997 || | |||||| || || || || | | ||| |||| ||| ||| ||| | |||| Sbjct 5748184 TGGTGATCCTTATAAGCTAATTGTTCTACTCTT-TTTATATGGTGTCTGTGCTGCCACAT 5748242 Query 170998 GGGTAGA 171004 | | ||| Sbjct 5748243 GAGAAGA 5748249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570268714459680