Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6 102 1e-16 seq2 82.4 1e-10 >seq6 Length=21016138 Score = 102 bits (112), Expect = 1e-16 Identities = 105/136 (77%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| ||||||||||| | || || |||||||| || |||||| Sbjct 6618062 CAGGCGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGT 6618121 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| |||||||||||||| ||||| || |||| ||| || || || ||||| Sbjct 6618122 CCCGGCATGAGGCCACGCTTTTTCAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAA 6618181 Query 33424 ATTCCTTCTACTGCAG 33439 || || || || |||| Sbjct 6618182 ATCCCCTCGAC-GCAG 6618196 Score = 91.5 bits (100), Expect = 2e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 63621 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63680 || || | ||| || ||||| || ||||||||| || ||| | |||| ||| || | Sbjct 2855485 TTGAAAAGGGTTGGCGAAGCATGAGTAAACCATCGTTGAGACATCAGATGGTAGGTTTTG 2855544 Query 63681 ATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 63739 ||||| | || || || | ||| || || || |||| || | ||||||||||||||| Sbjct 2855545 ATAGCAGCCTCAATGTCATCCTTG-TGTATCCCCACTGAAACTCTCATTAACATGTGCTG 2855603 Query 63740 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAA 63799 || || ||||||| |||| | ||||| | ||| || | |||| ||| || || Sbjct 2855604 TGGCCTCTCAACGACCTTGCCACCAAGCTTCAAGAGGTAAGACCTCTCCAGAGTCTTGAA 2855663 Query 63800 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||| |||| || |||||| | || ||||| || Sbjct 2855664 ACCAAAGTAGTCATAATCAAAGTCCCTATCATAAATTAT 2855702 >seq2 Length=26406337 Score = 82.4 bits (90), Expect = 1e-10 Identities = 97/128 (76%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 62705 AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62764 ||| || | ||| || || |||||||||||||| ||||| || ||||| ||| |||| || Sbjct 25079750 AATGAAAGTGTCTGCCAAGCCTTGAACACCAATTCCGATTGGCCTATGCCTCATATTTGA 25079691 Query 62765 GATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT---TC 62820 | | || ||| || ||| ||| |||||||||| || ||||| |||||||| | Sbjct 25079690 TCTCTTTGCAGTCT-CAACAGGGTAAAAATTAATATCAATTATTTTGTTGAGATTCCATG 25079632 Query 62821 TGACAATT 62828 |||||||| Sbjct 25079631 TGACAATT 25079624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947106557920