Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6 111 4e-19 seq3 104 6e-17 seq2 100 7e-16 >seq6 Length=21016138 Score = 111 bits (122), Expect = 4e-19 Identities = 159/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||||||||| |||| ||||||||| ||| | |||||| || | Sbjct 2855361 ATGAAAGATGACAGCATCGAGGGGATCTATGACACACTGAAGGAATGTGCTGCCATAAGC 2855302 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||| || || ||||||||||| | |||||| |||| || || | || || || Sbjct 2855301 AAATCTGCTGGAGGGATTGGTGTATCAGTTCACAATATTCGAGCTACTGGG-AGCTATAT 2855243 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || || ||| ||| ||| || ||| | ||||| ||||| |||||||| | |||| Sbjct 2855242 CCGAGGAACAAATGGAACCTCCAACGGGATTGTTCCTATGCTACGTGTGTTCAATGATAC 2855183 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || ||||||||||| ||| | |||||| Sbjct 2855182 TGCCCGTTATGTTGATCAGGGTGGAGGCAAGAG-AAAGGG 2855144 >seq3 Length=29602667 Score = 104 bits (114), Expect = 6e-17 Identities = 133/183 (73%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 371100 GCACCATGACTAATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGCGT 371159 ||||||||| ||| ||| | ||| |||||||||| || | |||||||||||||| ||| Sbjct 20040420 GCACCATGAGCAATCATGCAGTCCCTCTCCATCTCTCCGAAGCGGAGACCACCATCACGT 20040361 Query 371160 GACCGTCCTTCTGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCGG----TTGCGTGC 371215 || || || |||| || | ||||||| ||| | ||| ||| | | ||| Sbjct 20040360 GAGCGCCCCTCTGCAGGTTGCCTGGTAAGTATCTGCACGGGACCACGGCCTCTAGAGTGA 20040301 Query 371216 ATGTGACTTGTCAACTACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAAT 371275 || ||||||| | ||||||||||| || ||||| |||||| ||| ||| |||||| Sbjct 20040300 AT----CTTGTCATCCACCATGTGCTTAAGTCGCTGGTAATAAGTAGGACCAAGAAAAAT 20040245 Query 371276 CAT 371278 ||| Sbjct 20040244 CAT 20040242 >seq2 Length=26406337 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||||||||| || | ||| || || | | |||||| || | Sbjct 25078348 ATGAAAGATGATAGCATCGAGGGAATTTATGATACTCTCTCGGAATGTGCTACCATAAGC 25078407 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATT 363741 || ||| || ||||||||||| || || |||||| || | ||| ||||||||| Sbjct 25078408 AAATGTGCTGGTGGAATTGGTGTCTCAATTCACAATATTAGAGCAACTGGGAGTTACATT 25078467 Query 363742 CGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 || || ||| ||| || ||||| | ||||||||||| ||||| || | ||||| Sbjct 25078468 CGAGGAACAAATGGAACATCTAATGGAATTGTTCCCATGCTGCGTGTTTTCAATGATACT 25078527 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 || | || || || || |||||||| ||| | ||||| Sbjct 25078528 GCTCGTTATGTTGATCAAGGTGGAGGCAAGAGAAAAGG 25078565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353399609384