Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 seq5 105 5e-18 seq6 104 2e-17 seq1 104 2e-17 seq4 100 2e-16 seq9 84.2 2e-11 >seq2 Length=26406337 Score = 113 bits (124), Expect = 4e-20 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || ||||||||||| || | ||| || ||||||||| || Sbjct 2677044 TGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCCAGCTGC 2677103 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || || ||||| ||||| || | |||||| ||||| || || Sbjct 2677104 TTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTG 2677163 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | |||||| | |||| || | ||||||||| || |||| Sbjct 2677164 GC--CTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGG 2677221 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || |||||||| |||||||| Sbjct 2677222 TCAGAGTCTTGACAAAGATCTGCAT 2677246 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| || | || || || |||||||| || ||||||||||| || Sbjct 2676792 CCTCCCCTGAGACGCAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCG 2676851 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || ||||||||| || ||||| || | || || ||||| |||||| || Sbjct 2676852 AGGGTCCTGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 2676911 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | | ||||||| | |||| Sbjct 2676912 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACATTGTCGATAGTGTCGGAAGACTCCA 2676969 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || || || || |||||||| Sbjct 2676970 CCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 2677018 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||| | ||| | ||||||||| || Sbjct 2676588 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCCAGCTGC 2676647 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| |||| || ||||| |||||| || | ||||| ||||| || || Sbjct 2676648 TTGCCGGCAAAAATCAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTG 2676707 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | ||||| | |||| || | ||||||||| || || | Sbjct 2676708 GC--CTTGACGTTGTCGATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCAG 2676765 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || || |||||||| Sbjct 2676766 TGAGGGTCTTCACGAAGATCTGCAT 2676790 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || |||||||||||||| | ||| || | ||||||| || Sbjct 2677272 TGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCATCCTCCAGCTGC 2677331 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | || || ||||| ||||| || | |||||| || || || || Sbjct 2677332 TTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTA 2677391 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | ||||| || |||| || | |||||| || || |||| Sbjct 2677392 GC--CTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCGG 2677449 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 ||| || || || || |||||||| Sbjct 2677450 TCAATGTCTTCACGAAGATCTGCAT 2677474 >seq5 Length=20807039 Score = 105 bits (116), Expect = 5e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| ||||||||||| || |||||||| || |||| ||| | | ||| Sbjct 6507215 AGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCCAAGGTGCGGCCATCC 6507274 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || ||||| ||| | || || ||||| |||||| || | |||||| ||||| Sbjct 6507275 TCCAGCTGCTTGCCAGCAAATATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 6507334 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| |||||| | | | | ||||| | ||| || | || |||| Sbjct 6507335 TGAATCTTTGC--CTTCACGTTGTCAATCGTGTCTGACGACTCAACCTCTAGCGTAATGG 6507392 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||| || |||||||| || ||||| Sbjct 6507393 TTTTGCCGGTCAATGTCTTGACAAAGATTTGCAT 6507426 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||| | ||| | ||||||| | || Sbjct 2856311 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 2856370 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || ||||| |||||| || | ||||| ||||| || || Sbjct 2856371 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTG 2856430 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | | ||||| || |||| |||| |||||||| || || | Sbjct 2856431 GC--CTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCG 2856488 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| || || || || |||||||| ||| Sbjct 2856489 TCAGGGTCTTCACGAAGATCTGCATCTTG 2856517 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 16718 AGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTG 16777 ||||| || |||| || || ||||| |||||||| ||||||||||| || | ||| Sbjct 6507437 AGCCTGAGCACCAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGCAAGGGTGCGT 6507496 Query 16778 GCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCT 16837 ||||||| | || ||||| ||| | || || ||||| ||||| || | ||| || Sbjct 6507497 CCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCTGGTGGAATGCCTTCC 6507556 Query 16838 TTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 ||||| ||| | | |||||| | | | ||||| | ||| || | || Sbjct 6507557 TTGTCCTGAATCTTCGCCTTCACGTTATCGATTGTGTCTGACGACTCAACCTCAAGTGTA 6507616 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || ||||| || ||||||||||||||||| Sbjct 6507617 ATGGTCTTGCCTGTCAGGGTCTTGACAAAAATCTGCAT 6507654 >seq6 Length=21016138 Score = 104 bits (114), Expect = 2e-17 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 16718 AGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTG 16777 ||||| || |||| || || || |||||||| || ||||||||||| || | ||| | Sbjct 18970222 AGCCTGAGAACCAGGTGGAGGGTAGACTCCTTCTGNATGTTGTAGTCAGCAAGGGTGCGG 18970163 Query 16778 GCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCT 16837 ||||||||| || ||||| ||| | || || ||||| |||||| || | |||||| Sbjct 18970162 CCGTCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCC 18970103 Query 16838 TTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGG 16895 ||||| || || ||| || || | | | | ||||| || ||| || | | Sbjct 18970102 TTGTCCTGGATCTTGGCT--TTAACGTTGTCAATCGTGTCCGAGGACTCGACCTCAAGCG 18970045 Query 16896 TGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| || || ||||| || ||||| || |||||||| Sbjct 18970044 TGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 18970005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 16718 AGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTG 16777 ||||| || || | || || ||||||||||| || |||||||||||||||| ||| | Sbjct 18969538 AGCCTGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGG 18969479 Query 16778 GCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCT 16837 | ||||| | || ||||| || | || || ||||| ||||| || | |||||| Sbjct 18969478 CCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCC 18969419 Query 16838 TTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGG 16895 ||||| || || || ||| || | | | | ||||| || ||| || | || Sbjct 18969418 TTGTCCTGGATCTTGGC--CTTGACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGG 18969361 Query 16896 TGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| || || || || || || ||||| |||||||| Sbjct 18969360 TGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 18969321 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 16718 AGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTG 16777 ||||| || |||| || || ||||| ||||| || ||||||||||| || | || | Sbjct 18969994 AGCCTGAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGG 18969935 Query 16778 GCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCT 16837 | ||||||| || ||||| ||| | || || ||||| |||||| || | ||||| Sbjct 18969934 CCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCC 18969875 Query 16838 TTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGG 16895 ||||| || || || |||||| | | | | ||||| || ||| || | | Sbjct 18969874 TTGTCCTGGATCTTGGC--CTTCACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCG 18969817 Query 16896 TGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| || || ||||| || ||||| || |||||||| Sbjct 18969816 TGATGGTCTTCCCAGTCAGGGTCTTGACGAAGATCTGCAT 18969777 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | ||||| || |||| || || || |||||||| || ||||||||||| ||| Sbjct 18969775 CCTCCCCTGAGCCTGAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 18969716 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| || ||||| ||| | || || ||||| |||||| || Sbjct 18969715 AGGGTACGTCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGG 18969656 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | | ||||| | ||| Sbjct 18969655 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTGTCGATGGTGTCAGACGACTCGA 18969598 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || || || |||| || || || || |||||||| Sbjct 18969597 CCTCAAGGGTGATCGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 18969549 >seq1 Length=32922458 Score = 104 bits (114), Expect = 2e-17 Identities = 154/213 (72%), Gaps = 14/213 (7%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||||||| |||||||| || |||||||||||||| | || | ||||||||| || Sbjct 18387246 TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGCGTGCGGTCGTCCTCCAGCTGC 18387187 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACG---CCCTCTTTGT-CGGCAAT 16848 ||||| || | || |||||||| |||||| |||| | || || |||| | ||| Sbjct 18387186 TTGCCGGCGAAGATGAGCCGCTGCTGGTCC---GGCATGATTCCTTCCTTGTCCTGCACC 18387130 Query 16849 TTGCTGCTTCAC---CTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTT 16905 || | |||||| |||| | ||||||| | |||| |||| |||||||| || Sbjct 18387129 TT-CGCCTTCACGTTCTGG---ATCGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTT 18387074 Query 16906 TCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 |||||||| || || || || |||||||| || Sbjct 18387073 CCCGGTCAGGGTCTTCACGAAGATCTGCATCTT 18387041 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || |||||||||||||| | || | | ||| Sbjct 9819696 AGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCC 9819637 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || ||||| || | || || ||||| |||||| || | ||||| ||||| Sbjct 9819636 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCC 9819577 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | |||||| | | | | ||||| || |||| |||| ||||| || Sbjct 9819576 TGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTC 9819517 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || ||||| || || || || |||||||| || Sbjct 9819516 TTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 9819482 >seq4 Length=23326293 Score = 100 bits (110), Expect = 2e-16 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||||| ||||| ||||| || ||||| ||||| | Sbjct 20244978 CCGCCACGGAGGCGCAGGACAAGGTGCAGGGTGGATTCCTTCTGAATGTTATAGTC--CA 20244921 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || ||||| ||| | ||||| |||| |||||| ||| Sbjct 20244920 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGGTGCTGCTGGTCCGGAGGG 20244861 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| ||| | |||||| | | | | |||||| || ||| Sbjct 20244860 ATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTGTCAATCGTGTCGGAGGACTCTACC 20244801 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || || || || || || ||||||||||| Sbjct 20244800 TCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAAATCTGCAT 20244754 >seq9 Length=15534364 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| |||||||||||||| || |||||||||||||| | ||| | ||||| Sbjct 15313807 AGGACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCC 15313748 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCC 16822 |||| || ||||| || | || |||||||| |||||| Sbjct 15313747 TCCAGCTGCTTGCCGGCGAAGATTAGCCGCTGCTGGTCC 15313709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087940755880