Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5 100 2e-16 seq2 98.7 7e-16 seq8 82.4 5e-11 >seq5 Length=20807039 Score = 100 bits (110), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||| || |||||| ||||||||||| ||||| |||| | ||| |||| || Sbjct 6507445 CACCAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGCAAGGGTGCGTCCGTCCTC 6507504 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | || || |||||||| || ||||| || || || | || | |||||| |||||| Sbjct 6507505 GAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTG 6507564 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCT--CCACTTTCAACTTCTAATGTAATAGTT 38285 ||| || |||||| || | || || ||| | || ||||| || | |||||| || Sbjct 6507565 AATCTTCGCCTTCACGTTATCGATTGTGTCTGACGAC--TCAACCTCAAGTGTAATGGTC 6507622 Query 38286 TTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || |||| ||| || || || ||||||||| Sbjct 6507623 TTGCCTGTCAGGGTCTTGACAAAAATCTGCATG 6507655 >seq2 Length=26406337 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||| | || | ||||| |||||||| |||||| ||||| |||||||||| Sbjct 20340457 TACCTCCTCTGAGGCGGAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAG 20340516 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || |||| || | ||||| || ||||||||||| | || ||||| | | Sbjct 20340517 CCAATGTGCGCCCGTCTTCCAGCTGTTTCCCAGCAAATATTAGCCTCTGCTGATCAGGAG 20340576 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 || || || |||||| || || ||| ||||| | || ||||| || || | Sbjct 20340577 AGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTATCAGAGCTCTCTA 20340636 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || ||||| || || || | ||| ||||| || || ||||| Sbjct 20340637 CCTCAAGAGTGATAGTCTTTCCTGTAAGGGTCTTCACAAAGATTTGCAT 20340685 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||| |||||||||||||| |||||| || || ||||| |||| ||| ||| | Sbjct 20340698 ACGCAGAACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAACGTGCGTCC 20340757 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | || ||||| ||||| || || | || ||||| | |||| || || || Sbjct 20340758 ATCTTCAAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGATCAGGAGGGATACCCTCCTT 20340817 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 |||| || || ||| || || | | ||||| |||||||| || | ||| || Sbjct 20340818 GTCCTGGATCTTGGCCTTGACGTTGTCAATTGTATCAGAGCTTTCAACCTCAAGTGTGAT 20340877 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || | ||| ||||| || |||||||| Sbjct 20340878 CGTCTTTCCTGTAAGGGTCTTCACAAAGATCTGCAT 20340913 >seq8 Length=20165712 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | || | ||| ||||| |||||| ||||||||||| |||| Sbjct 3967502 ACCACCACGGAGACGGAGGACAAGATGGAGAGTCGACTCCTTCTGAATATTGTAGTCAGC 3967561 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | ||| | || || | || || |||||||| || || || || ||||| | || Sbjct 3967562 AAGAGTACGGCCTTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGG 3967621 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCT--CCACTTTCA 38267 || ||||| || ||| ||| || ||||||||| | | || ||| | || ||| Sbjct 3967622 GATCCCTTCCTTATCCTGAATCTTCGCCTTCACATTGTCAATGGTGTCTGACGAC--TCA 3967679 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || | || || || || || || | ||| || ||||| |||| |||| Sbjct 3967680 ACCTCAAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTTCATG 3967730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947151013972