Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6 105 8e-18 seq2 87.8 2e-12 >seq6 Length=21016138 Score = 105 bits (116), Expect = 8e-18 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||| ||||||||||| | || | |||||||| || |||||| Sbjct 6618062 CAGGCGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGT 6618121 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 || ||||| |||||||||||||| ||||| || |||| |||| || || || || ||||| Sbjct 6618122 CCCGGCATGAGGCCACGCTTTTTCAGCCAGAAGATGG-CGCAGAACGAGCCCGAGAAGAA 6618180 Query 32780 AATTCCTTCTAC 32791 ||| || || || Sbjct 6618181 AATCCCCTCGAC 6618192 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 63476 TTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63535 || || | ||| || ||||| |||||||||||| || ||| | |||| ||| || | Sbjct 2855485 TTGAAAAGGGTTGGCGAAGCATGAGTAAACCATCGTTGAGACATCAGATGGTAGGTTTTG 2855544 Query 63536 ATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 63594 ||||| | || || || | ||| || || || |||| || | ||||||||||||||| Sbjct 2855545 ATAGCAGCCTCAATGTCATCCTTG-TGTATCCCCACTGAAACTCTCATTAACATGTGCTG 2855603 Query 63595 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAA 63654 || || ||||||| |||| | ||||| | ||| || | |||| ||| || || Sbjct 2855604 TGGCCTCTCAACGACCTTGCCACCAAGCTTCAAGAGGTAAGACCTCTCCAGAGTCTTGAA 2855663 Query 63655 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||| |||| || |||||| | || ||||| || Sbjct 2855664 ACCAAAGTAGTCATAATCAAAGTCCCTATCATAAATTAT 2855702 >seq2 Length=26406337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/128 (77%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 62560 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62619 ||| || | |||||| || |||||||||||||| ||||| || ||||| ||| |||| || Sbjct 25079750 AATGAAAGTGTCTGCCAAGCCTTGAACACCAATTCCGATTGGCCTATGCCTCATATTTGA 25079691 Query 62620 GATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT---TC 62675 | | || ||| || ||| ||| |||||||||| || ||||| |||||||| | Sbjct 25079690 TCTCTTTGCAGTCT-CAACAGGGTAAAAATTAATATCAATTATTTTGTTGAGATTCCATG 25079632 Query 62676 TGACAATT 62683 |||||||| Sbjct 25079631 TGACAATT 25079624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631904955200