Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5 141 8e-29 seq6 122 8e-23 seq2 122 8e-23 seq8 89.7 4e-13 >seq5 Length=20807039 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| ||||| || || ||||||| | || || ||||| || Sbjct 6507883 AATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTGGAGGTCGAGTCCTC 6507824 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| |||||| ||||| || || ||||| ||||| || Sbjct 6507823 GGACACGATCGACAACGTGAAGGCGAAAATCCAGGACAAGGAGGGCATTCCCCCTGATCA 6507764 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| |||| || || ||||| || | || |||| ||| || ||| |||||||| Sbjct 6507763 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGGACGTTGGCAGATTACAA 6507704 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || |||||||| || || | || || ||||| || ||||| Sbjct 6507703 TATTCAGAAGGAATCCACTCTTCACCTTGTTCTTAGGCTGAGGGGAGG 6507656 Score = 138 bits (152), Expect = 1e-27 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || |||| ||| | || || |||||||| Sbjct 6507654 ATGCAGATTTTTGTCAAGACCCTGACAGGCAAGACCATTACACTTGAGGTTGAGTCGTCA 6507595 Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| | || ||||| | || | ||| ||||| ||||| |||||||| |||| Sbjct 6507594 GACACAATCGA-TAACGTGAAGGCGAAGATTCAG-GACAAGGAAGGCATTCCACCAGACC 6507537 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||||||||| || | || || | ||||| | | || |||| Sbjct 6507536 AGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGACGCACCCTTGCTGACTACA 6507477 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | |||||||| |||||||| || || | ||||| ||||| || || || Sbjct 6507476 ACATTCAAAAGGAATCCACTCTCCACCTGGTGCTCAGGCTCAGGGGTGG 6507428 Score = 113 bits (124), Expect = 4e-20 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||| || | || || || || ||| Sbjct 6508110 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATAACCCTTGAGGTTGAATCCTCT 6508051 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| || || |||| || | ||| ||||| || || |||||||||||| Sbjct 6508050 GATACAATCGA--CAATGTCAAAGCCAAGATTCAG-GACAAGGAGGGTATTCCACCTGAC 6507994 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||| ||||| ||| | || || | ||||| | | |||||| Sbjct 6507993 CAGCAGCGCCTCATCTTTGCGGGCAAGCAACTTGAGGACGGCCGCACCCTCGCAGATTAC 6507934 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| ||||| ||||| || || | || || | || || ||||||| Sbjct 6507933 AACATTCAGAAAGAGTCCACCCTCCACCTTGTCCTTCGCCTCAGGGGAGGAA 6507882 Score = 105 bits (116), Expect = 6e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || |||| || |||| || ||||| || Sbjct 16643511 ATGCAGATCTTTGTGAAGACTCTCACTGGCAAGACCATAACCCTCGAGGTTGAGTCCTCG 16643570 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| || ||| || || || || || ||||| |||| Sbjct 16643571 GACACCATTGA--CAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATCCCACCGGACC 16643628 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||||||||| || | ||||||| |||||| | | || |||| Sbjct 16643629 AGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGCACTCTTGCTGACTACA 16643688 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || |||||||| ||| | || || Sbjct 16643689 ACATCCAGAAGGAGTCCACGCTTCATCTTGTCCT 16643722 >seq6 Length=21016138 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| |||| || ||||| || Sbjct 18969777 ATGCAGATCTTCGTCAAGACCCTGACTGGGAAGACCATCACGCTCGAGGTCGAGTCCTCG 18969836 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || ||||| || ||||| Sbjct 18969837 GACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 18969896 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || |||| |||||| | | || ||||| Sbjct 18969897 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTGCTGACTACAAC 18969956 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || |||||||| || || | ||||| ||||| || || || Sbjct 18969957 ATCCAGAAGGAATCCACCCTCCACCTGGTGCTCAGGCTCAGGGGTGG 18970003 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| | || || ||||| ||| Sbjct 18970233 ATGCAGATCTTCGTGAAGACCCTTACCGGCAAGACCATCACCCTGGAGGTTGAGTCCTCT 18970292 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || ||||| || ||| ||||| || || ||||| |||||||| Sbjct 18970293 GACACTATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAG 18970352 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || | || |||| ||||| | | |||||||| Sbjct 18970353 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCGGATTACAAC 18970412 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || || || |||||||| || || || |||||| Sbjct 18970413 ATCCAGAAGGAATCCACCCTCCACTTGGTGCTA 18970445 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| ||||| | ||||| | || || ||||||||| Sbjct 18969549 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACGATCACCCTTGAGGTCGAGTCGTCT 18969608 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 18969609 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 18969668 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || |||| || || ||| || ||||| Sbjct 18969669 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGACGTACCCTGGCTGACTACAAC 18969728 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || | ||||| ||||| || ||||| Sbjct 18969729 ATCCAGAAGGAGTCTACTCTCCACCTGGTGCTCAGGCTCAGGGGAGG 18969775 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || || ||||| || Sbjct 18970005 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACGCTTGAGGTCGAGTCCTCG 18970064 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | | |||| || | || ||||| || || ||||| || ||||| Sbjct 18970065 GACACGATTGACAACGTTAAAGCCAAGATCCAG-GACAAGGAGGGCATTCCCCCGGACCA 18970123 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| || | || || | ||||| | | || ||||| Sbjct 18970124 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTGCTGACTACAA 18970183 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || | || || ||||| || || || Sbjct 18970184 CATNCAGAAGGAGTCTACCCTCCACCTGGTTCTCAGGCTCAGGGGTGG 18970231 >seq2 Length=26406337 Score = 122 bits (134), Expect = 8e-23 Identities = 153/206 (74%), Gaps = 7/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||||||||| || ||||||| | || || ||| || Sbjct 20341140 ATGCAGATCTTTGTTAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTTGAGATTTCC 20341081 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || |||| || | || ||||| || || || || || ||| Sbjct 20341080 GACACCATCGA--CAATGTCAAAGCCAAGATCCAG-GACAA-GAGGGCATCCCCCCAGAC 20341025 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| || | |||||||| ||||| ||| |||| |||| || || | | || ||| Sbjct 20341024 CAACAGAGGCTGATTTTTGCTGGCAAGCAACTAGAGGATGGCCGAACACTCGCTGACTAC 20340965 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 ||||||||||| |||||||| || || Sbjct 20340964 AATATTCAAAAGGAATCCACCCTCCA 20340939 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | ||||| || |||| || | || |||||| || Sbjct 20340457 ATGCAGATCTTTGTGAAGACTCTTACCGGCAAGACCATAACTCTGGAGGTGGAGAGCTCC 20340398 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| ||||||| ||||| || || || || ||||||| Sbjct 20340397 GACACAATTGA--CAATGTTAAGGCAAAAATCCAGGACAAGGAGGGCATCCCGCCTGACC 20340340 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || ||||| || || || | || || | ||||| ||| ||||||| Sbjct 20340339 AGCAGAGGCTCATCTTTGCTGGGAAGCAGCTGGAGGACGGGCGCACATTGGCTGATTACA 20340280 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||| || |||||||| || || || || || Sbjct 20340279 ATATTCAGAAGGAATCCACCCTTCACTTGGTCCT 20340246 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| ||||||| || ||||||| |||| |||||||| || Sbjct 2677246 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 2677187 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 2677186 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 2677127 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | | || | | || ||||| Sbjct 2677126 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACCCTTGCTGACTACAAC 2677067 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || | || || | || || ||||| Sbjct 2677066 ATCCAGAAGGAGTCGACCCTCCACCTTGTCCTCCGTCTCAGGGGAGG 2677020 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || |||||| ||| Sbjct 2676790 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAGAGCTCT 2676731 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || ||||| || || ||||| Sbjct 2676730 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAG 2676671 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | |||||||||||||| || | || || | || || | | ||| ||||| Sbjct 2676670 CAGCGCCTGATTTTTGCCGGCAAGCAGCTGGAGGACGGCCGTACCCTCGCCGACTACAAC 2676611 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 2676610 ATCCAGAAGGAGTCCACCCTCCA 2676588 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| |||| || || ||||||| | || |||||||| || Sbjct 2677018 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTGGAGTCTTCC 2676959 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||||||||| || || ||| || ||| ||||| || || || || || |||| Sbjct 2676958 GACACTATCGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACC 2676901 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || || |||||||| || | || || | | || | | || |||| Sbjct 2676900 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCAGGACCCTCGCTGACTACA 2676841 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || || || || || || || || | || || | || || ||||| Sbjct 2676840 ACATCCAGAAGGAGTCGACCCTCCACCTTGTCCTGCGTCTCAGGGGAGG 2676792 >seq8 Length=20165712 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| | || || || ||||| | ||||| || | ||||| | || || |||||||| Sbjct 3967729 ATGAAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCCTTGAGGTTGAGTCGTCA 3967670 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| | || | ||| || || |||||||| || ||||| || Sbjct 3967669 GACACCATTGACAATGTGAAGGCGAAGATTCAG-GATAAGGAAGGGATCCCTCCTGATCA 3967611 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| || | || || | || ||| | | || ||||| Sbjct 3967610 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGAAGGCCGTACTCTTGCTGACTACAA 3967551 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || || || || || ||| | || || Sbjct 3967550 TATTCAGAAGGAGTCGACTCTCCATCTTGTCCT 3967518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327936625780