Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq9 127 2e-24 seq5 125 8e-24 seq8 114 1e-20 >seq9 Length=15534364 Score = 127 bits (140), Expect = 2e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 166780 ATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGG 166839 ||||||||||| ||| || ||||||||||| || | ||||||||| | || || ||| Sbjct 12953792 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 12953851 Query 166840 CCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAAC 166899 ||||| || || || ||||| |||||| | ||| |||| || ||||| |||||||| ||| Sbjct 12953852 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 12953911 Query 166900 GGTTTCAACTTCAACCAGTC 166919 || ||||| |||||||| || Sbjct 12953912 GGATTCAATTTCAACCAATC 12953931 >seq5 Length=20807039 Score = 125 bits (138), Expect = 8e-24 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 167759 TTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGT 167818 |||||||||| | ||||| || |||||||||||| ||||| | || ||| | || || Sbjct 7585978 TTCTTTGCACGGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGA 7586037 Query 167819 TTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGT 167878 || ||||| |||||| | ||||| || ||||||||||||||||| || | |||||| Sbjct 7586038 TTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCG 7586097 Query 167879 GCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGA 167937 || ||||| | || || ||||| | || || || || ||||| | ||| || ||||| Sbjct 7586098 GCTTTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGA 7586156 >seq8 Length=20165712 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 168122 CTCGCACTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGAT 168181 || || || || || ||||| ||||||||||| || |||||| | | ||||| || ||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 168182 CCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGG 168241 || || ||||| |||||||| || ||||| || || | || || || | ||||| ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 168242 ATGGCTCCAGTAGACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGA 168301 ||||| | || || || |||||||| || ||||||| || || || | ||| | Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGT 4128807 Query 168302 GGCAACGCTCT 168312 || |||||||| Sbjct 4128808 GGAAACGCTCT 4128818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567231914915200