Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq7 147 4e-30 seq6 145 2e-29 seq12 93.3 9e-14 seq11 93.3 9e-14 seq5 93.3 9e-14 seq1 93.3 9e-14 seq9 91.5 3e-13 seq8 91.5 3e-13 seq10 87.8 4e-12 seq3 86.0 1e-11 >seq7 Length=22540073 Score = 147 bits (162), Expect = 4e-30 Identities = 405/612 (66%), Gaps = 14/612 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| |||||||| ||||||||||||| Sbjct 17338004 TCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAAGGGGTTAACA 17337945 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 |||||||| ||| ||| || || | || | ||| || || |||||||| | Sbjct 17337944 ACATTGTACATCTTCTTGCAGCCCAGCGCCATGAGCAAGCGATCAGCGACAAACTCGATG 17337885 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA-TACGACAAGGAATTGCCTCACAGAT 251741 ||||| | |||||| || |||||| |||| | |||| || | ||| || |||| Sbjct 17337884 TACTGGCTCATCAGCTCCCCGTTCATCCCAACGAGCGCGAC-GGGGAGTGCGTCGCAGAC 17337826 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| ||| | ||| || |||| || || | ||||| | || | | | || Sbjct 17337825 GAACTCCCTCTCGATGTCAACGGCATCAGCAACAATCTCGCGGACGCGGGACTCGTCAAG 17337766 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAAACTGTTG--GTGCAGACCCTCGTC 251858 |||| | || | ||| | || || ||| || || | ||| || |||||||| Sbjct 17337765 CTTGCTTCGGAGGAGTTCGTAGACGAGGCACGCGAA---GTCGCAGTGGAGCCCCTCGTC 17337709 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||||| | || || ||||| | ||||| ||| ||||||| Sbjct 17337708 GCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGGGCATGAGTCCACGCTTCTTGAGCCA 17337649 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| ||||| ||||| || ||||| | | |||||||| || | | || || || Sbjct 17337648 GAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCAGGCGAACGCGACGAG 17337589 Query 251979 GCGCTCAGCAAACGACTTG--TCCTGCGA-CAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035 ||||| || || || | || ||| | || | || ||||| | ||||| Sbjct 17337588 CCGCTCGGCGAAGCGCTCGCCGCCGTCGATCCAGCGCATC---GCCCAGTCGGCCTTGCG 17337532 Query 252036 TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTC 252095 | || || |||| || |||| || ||||| || | |||| | ||||| Sbjct 17337531 GCGGACGGCCGGGACGGTGACGATGGCGCGGAAGAGGCGGTCCTTCTCGACGTCGTCGCG 17337472 Query 252096 GATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTG 252155 |||| | || ||||| || |||||||||||||| |||||| ||| || ||||| Sbjct 17337471 GATGTAGGTCTCGAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGATGGCGATCTG 17337412 Query 252156 GTAAGCATAGAA 252167 | | | ||||| Sbjct 17337411 GAAGCCGTAGAA 17337400 >seq6 Length=21016138 Score = 145 bits (160), Expect = 2e-29 Identities = 404/613 (66%), Gaps = 14/613 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||||| ||| ||||| |||||||| ||||||| ||||| | | Sbjct 6617795 TCAAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGGTTGGCG 6617854 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| ||| ||| || || | || | |||||| || || ||||| | Sbjct 6617855 ACGTTGTACATCTTCTTGCAGCCGAGCGCCATGAGCAAGCGGTCGGCGACGAACTCGATG 6617914 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || || ||||||||| | | |||| ||| || || |||| Sbjct 6617915 TACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGACGGGGAGC-GCGTCGCAGAC 6617973 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| ||| | ||| || | || || || | || || | || | ||| | || Sbjct 6617974 GAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGCGGACGCGAGCCTCATCGAG 6618033 Query 251802 CTTGTTCTCCAGCTTTGAG----TACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 |||| || || ||| || ||||| | | || | ||| |||||||||| Sbjct 6618034 CTTGCCCTGGAG----GAGATCATAGAGGAGGCAGGCGAAGTCGCAGTGGAGACCCTCGT 6618089 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 |||| ||||| ||||||||| | | || || ||||| | ||||| || | |||| Sbjct 6618090 CGCGGGAGATGAGCTCGTTGGAGAAAGTGAGTCCCGGCATGAGGCCACGCTTTTTCAGCC 6618149 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 ||||||| ||||| || || || ||||| | | |||||||| || | |||| || | Sbjct 6618150 AGAAGATGGCGCAGAACGAGCCCGAGAAGAAAATCCCCTCGACGCAGGCGAATGCCACGA 6618209 Query 251978 GGCGCTCAGCAAACGACTTGTCCTGCGACAA--GAACTTCTGTGCCCATGCTGCCTTCTT 252035 ||||||| || || || | || || | | | | || ||||| | ||||| Sbjct 6618210 GGCGCTCGGCGAAGCGCTCG-CCGCCGTCGATCCATCGCATG-GCCCAATCGGCCTTGCG 6618267 Query 252036 TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTC 252095 | || ||||||| || ||||| || ||||| || | |||| | ||||| Sbjct 6618268 GCGGACGGCGGGGACGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACGTCGTCGCG 6618327 Query 252096 GATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTG 252155 |||| | || ||||| || |||||||||||||| |||||| ||| || ||||| Sbjct 6618328 GATGTAGGTCTCGAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGATGGCGATCTG 6618387 Query 252156 GTAAGCATAGAAT 252168 | | | |||||| Sbjct 6618388 GAAGCCGTAGAAT 6618400 >seq12 Length=17761961 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 14601219 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 14601278 Query 142563 CCCCAC 142568 |||||| Sbjct 14601279 CCCCAC 14601284 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 14911796 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 14911737 Query 142563 CCCCAC 142568 |||||| Sbjct 14911736 CCCCAC 14911731 >seq11 Length=21046960 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 20903102 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 20903161 Query 142563 CCCCAC 142568 |||||| Sbjct 20903162 CCCCAC 20903167 >seq5 Length=20807039 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 9917328 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 9917269 Query 142563 CCCCAC 142568 |||||| Sbjct 9917268 CCCCAC 9917263 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 17507778 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17507719 Query 142563 CCCCAC 142568 |||||| Sbjct 17507718 CCCCAC 17507713 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 17881736 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17881677 Query 142563 CCCCAC 142568 |||||| Sbjct 17881676 CCCCAC 17881671 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 14568912 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14568853 Query 142564 CCCAC 142568 ||||| Sbjct 14568852 CCCAC 14568848 >seq1 Length=32922458 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 22730641 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 22730700 Query 142563 CCCCAC 142568 |||||| Sbjct 22730701 CCCCAC 22730706 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 26696512 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 26696453 Query 142564 CCCAC 142568 ||||| Sbjct 26696452 CCCAC 26696448 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || ||||||||| |||||||| Sbjct 22028051 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGAGTTCGAGC 22028110 Query 142564 CCCAC 142568 ||||| Sbjct 22028111 CCCAC 22028115 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 31865153 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 31865094 Query 142564 CCCAC 142568 ||||| Sbjct 31865093 CCCAC 31865089 >seq9 Length=15534364 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 7598799 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7598858 Query 142564 CCCAC 142568 ||||| Sbjct 7598859 CCCAC 7598863 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 6407595 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6407536 Query 142564 CCCAC 142568 ||||| Sbjct 6407535 CCCAC 6407531 >seq8 Length=20165712 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 12879750 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12879809 Query 142564 CCCAC 142568 ||||| Sbjct 12879810 CCCAC 12879814 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 13071553 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 13071612 Query 142562 GCCCCAC 142568 ||||||| Sbjct 13071613 GCCCCAC 13071619 >seq10 Length=15557830 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || |||||||| |||||||| Sbjct 10595649 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTTGGTTCGAG 10595590 Query 142563 CCCCAC 142568 |||||| Sbjct 10595589 CCCCAC 10595584 >seq3 Length=29602667 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 14105957 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14106016 Query 142564 CCCAC 142568 ||||| Sbjct 14106017 CCCAC 14106021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836641970092