Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq4 96.9 3e-15 seq5 95.1 1e-14 seq8 89.7 4e-13 seq2 89.7 4e-13 >seq6 Length=21016138 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || ||| ||||| || || ||| Sbjct 18969517 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCAAGCTGCTTGCCA 18969458 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| || || ||||| || ||||| ||||| || Sbjct 18969457 GCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 18969398 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | ||| || || || | ||| | || ||||| || || || Sbjct 18969397 ACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTC 18969338 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 18969337 TTCACAAAGATCTGCAT 18969321 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || || || | || ||||| || || ||||||||||| Sbjct 18970460 ACCACCACGGAGGCGTAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCCGC 18970401 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || ||| || || || |||||||| |||| |||||||| ||||| || || Sbjct 18970400 AAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGG 18970341 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||| || ||||| ||||| || | | |||| ||||| | ||| || || Sbjct 18970340 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATAGTGTCAGAGGACTCAAC 18970281 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| ||| | || |||||||| || || || || || |||||||| Sbjct 18970280 CTCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTCACGAAGATCTGCAT 18970233 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| || || ||||| ||| || || || || || Sbjct 18969745 GTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGTCCATCCTCCAGCTGCTTGCCG 18969686 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| |||||||| || ||||| || ||||| ||||| || Sbjct 18969685 GCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 18969626 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | || ||||| || | ||| | ||| || || |||| || Sbjct 18969625 ACGTTGTCGATGGTGTCAGACGACTCGACCTCAAGGGTGATCGTCTTACCAGTCAAGGTC 18969566 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 18969565 TTCACGAAGATCTGCATG 18969548 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| || | || || || || || || || || Sbjct 18970201 GTAGACTCCTTCTGNATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCG 18970142 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| |||||||| |||||||| || ||||| ||||| ||| Sbjct 18970141 GCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTA 18970082 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | ||| ||||| || | || | || ||||| ||||| || Sbjct 18970081 ACGTTGTCAATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCTGTCAGGGTC 18970022 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 18970021 TTGACGAAGATCTGCAT 18970005 >seq4 Length=23326293 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || |||||||| || | || || | || | || ||||| || |||||||| || || Sbjct 20244981 ATTCCGCCACGGAGGCGCAGGACAAGGTGCAGGGTGGATTCCTTCTGAATGTTATAGTCC 20244922 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || || || || ||||| |||| || |||| ||||||||| Sbjct 20244921 A--AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGGTGCTGCTGGTCCGGA 20244864 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| |||||| || | | |||| ||||||| ||| || Sbjct 20244863 GGGATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTGTCAATCGTGTCGGAGGACTCT 20244804 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| || || || || || ||||||||||| Sbjct 20244803 ACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAAATCTGCAT 20244754 >seq5 Length=20807039 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| || || || ||| || || || || ||| Sbjct 6507230 GTGGACTCCTTCTGGATGTTGTAATCTGCCAAGGTGCGGCCATCCTCCAGCTGCTTGCCA 6507289 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | ||||| ||||| |||||||| |||||||| || ||||| ||||||| || Sbjct 6507290 GCAAATATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTC 6507349 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | || || || || | || | ||||||||||||| || Sbjct 6507350 ACGTTGTCAATCGTGTCTGACGACTCAACCTCTAGCGTAATGGTTTTGCCGGTCAATGTC 6507409 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 6507410 TTGACAAAGATTTGCAT 6507426 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| |||||||||||||| | || || || |||||||| || || Sbjct 6507914 GTGGACTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCC 6507973 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| ||||| ||||| || ||||| || || ||||| |||||| ||| Sbjct 6507974 GCAAAGATGAGGCGCTGCTGGTCAGGTGGAATACCCTCCTTGTCCTGAATCTTGGCTTTG 6508033 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | || || | |||||| || || | ||| | || ||||| || || || Sbjct 6508034 ACATTGTCGATTGTATCAGAGGATTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGTGTC 6508093 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 6508094 TTCACAAAGATCTGCAT 6508110 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| |||||||||||||| || | || || || || || || || || Sbjct 6507458 GTGGATTCCTTTTGAATGTTGTAGTCAGCAAGGGTGCGTCCGTCCTCGAGCTGCTTGCCG 6507517 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| ||||| ||||| || ||||||||||| ||||| |||||| || Sbjct 6507518 GCAAAGATGAGGCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTCGCCTTC 6507577 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | || || || || | || | || ||||| ||||| || Sbjct 6507578 ACGTTATCGATTGTGTCTGACGACTCAACCTCAAGTGTAATGGTCTTGCCTGTCAGGGTC 6507637 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||||||||||||| || Sbjct 6507638 TTGACAAAAATCTGCATGCCT 6507658 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 114179 ATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTG 114238 ||| | ||| || || || || |||||||| || | ||| || |||||| || || Sbjct 16643714 ATGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGCCCATCTTCGAGCTG 16643655 Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298 || || || ||||||||||||| |||||||| || || || || || || ||||| Sbjct 16643654 CTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTT 16643595 Query 114299 TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358 || | | |||| |||||| | ||| || || || | ||| | || ||||| || Sbjct 16643594 GGCCTTGACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTTATGGTCTTGCCAGT 16643535 Query 114359 CAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || ||||| |||||||| Sbjct 16643534 GAGAGTCTTCACAAAGATCTGCAT 16643511 >seq8 Length=20165712 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || | ||| | || || || || ||||| ||||| || Sbjct 3967502 ACCACCACGGAGACGGAGGACAAGATGGAGAGTCGACTCCTTCTGAATATTGTAGTCAGC 3967561 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | |||||| || ||||| || || || || ||||||||||||| || || ||||| Sbjct 3967562 AAGAGTACGGCCTTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGG 3967621 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || ||||| || || |||||| || | | |||| |||||| | || || || Sbjct 3967622 GATCCCTTCCTTATCCTGAATCTTCGCCTTCACATTGTCAATGGTGTCTGACGACTCAAC 3967681 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || | ||| | ||| |||||||| || || || || || |||| |||| || Sbjct 3967682 CTCAAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTTCATGCCT 3967733 >seq2 Length=26406337 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || || || ||||||||||||| ||||| || || ||||| || ||| Sbjct 2677092 TCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTG 2677151 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | || | |||||||| || || || || | ||| | Sbjct 2677152 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATG 2677211 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||||||||||||| || ||||| ||||||||| || Sbjct 2677212 GTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCATGCCT 2677250 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | || | ||| || || || || ||| Sbjct 2677278 GTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCA 2677337 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| || || ||||| || || || ||||| || Sbjct 2677338 GCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTAGCCTTG 2677397 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | ||| || || || | ||| | || |||||||||| || Sbjct 2677398 ACGTTGTCAATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAATGTC 2677457 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 2677458 TTCACGAAGATCTGCAT 2677474 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || || ||| ||||||||||||| |||||||| || ||||| || ||| Sbjct 2676864 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTG 2676923 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | || | ||||||| || || || || | ||| | Sbjct 2676924 TCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATG 2676983 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || ||||| |||||||| || || || ||||||||| || Sbjct 2676984 GTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATGCCT 2677022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134338555344