Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6 322 9e-83 seq7 316 4e-81 >seq6 Length=21016138 Score = 322 bits (356), Expect = 9e-83 Identities = 518/734 (71%), Gaps = 28/734 (4%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||| || || ||||| || || |||||||| || ||||||||||| Sbjct 6618489 CTCGCCTTCTTCGCGGCGTCCGACGGAATCGTGCTCGAGAACCTCGCGTCCAGGTTCATG 6618430 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || |||||| | |||||| | ||||||||||||||||| ||||| |||||| Sbjct 6618429 TCCGACGTGCAGGTCGCCGAGGCGAGGGCATTCTACGGCTTCCAGATCGCCATCGAGAAC 6618370 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | |||||| | || ||||||| || ||||||| Sbjct 6618369 ATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGACGTCGAGAAG 6618310 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | || ||| ||||| || || | ||| | || ||||| || ||||| Sbjct 6618309 GACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTCCGCCGCAAGGCCGATTGGGCC 6618250 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | |||||||| | ||| ||| |||| |||| | || || || || || Sbjct 6618249 ATGCGATGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCTCGTGGCATTCGCCTG 6618194 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGG 42780 ||||||||| || |||||||||||| | ||| | ||||||||||||| || || || Sbjct 6618193 CGTCGAGGGGATTTTCTTCTCGGGCTCGTTCTGCGCCATCTTCTGGCTGAAAAAGCGTGG 6618134 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 || ||||| |||||||| ||||| ||||| |||||| | | |||||||| || || Sbjct 6618133 CCTC-ATGCCGGGACTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCACT 6618075 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898 | ||||| |||||||||| ||| | |||| | |||| ||||| ||| || Sbjct 6618074 GCGACTTCGCCTGCCTCC---TCTATGATCTCCTCCAGGGCAAG--CTCGATGAGGCTCG 6618020 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 ||||| | ||| || | || ||||| || ||||||| ||||||| || | |||| Sbjct 6618019 CGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTGCGACGCGCT 6617960 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 ||||| | || |||||||||||| |||||||||| || |||||||| ||| |||||| Sbjct 6617959 CCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGC 6617900 Query 43019 CGACCATCTCCTGTGCCAGATGGGTCTCAGCCGC------CTCTACAAC-ACGCCGTGCC 43071 |||| | | || | |||| ||| || || | |||||| |||| || Sbjct 6617899 CGAC---CGCTTG---CTCATGGCGCTCGGCTGCAAGAAGATGTACAACGTCGCC-AACC 6617847 Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131 | ||||||| |||||| |||||| || |||||||||||||||| || |||||||| | Sbjct 6617846 CGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTTGAGAAGCGTG 6617787 Query 43132 TCGCCGACTACCAG 43145 ||| ||||||||| Sbjct 6617786 TCGGTGACTACCAG 6617773 >seq7 Length=22540073 Score = 316 bits (350), Expect = 4e-81 Identities = 519/734 (71%), Gaps = 28/734 (4%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| ||| |||||||| || ||||||||||| Sbjct 17337310 CTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCGTCCAGGTTCATG 17337369 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || |||||| | |||||| | ||||||||||||||||| ||||| |||||| Sbjct 17337370 TCCGACGTGCAGGTCGCCGAGGCGAGGGCGTTCTACGGCTTCCAGATCGCCATCGAGAAC 17337429 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | |||||| | || ||||||| || ||||||| Sbjct 17337430 ATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGACGTCGAGAAG 17337489 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | || ||| ||||| | || | || | || ||||| ||||||||| Sbjct 17337490 GACCGCCTCTTCCGCGCCATCGTCACCGTCCCGGCCGTCCGCCGCAAGGCCGACTGGGCG 17337549 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | ||||||||| | ||| ||| |||| |||| |||| || || || || Sbjct 17337550 ATGCGCTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGGCTCGTCGCGTTCGCCTG 17337605 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGG 42780 ||||||||| ||||||||||||||| ||||| | ||||||||||||||||| || || Sbjct 17337606 CGTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGTGG 17337665 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 || |||||||| ||||||||||| ||||| |||||| | | ||||||||||| || Sbjct 17337666 ACTC-ATGCCCGGGCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGGCTCCACT 17337724 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898 | ||||| || |||||| || ||| | |||| | |||| || || || || Sbjct 17337725 GCGACTTCGCGTGCCTC--GTCTACGA-ACTCCTCCGAAGCAAG--CTTGACGAGTCCCG 17337779 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTC----ACGCAGT 42954 ||||| | || | | || ||||| || ||||||| ||||||| || ||||| Sbjct 17337780 CGTCCGCGAGATTGTTGCTGATGCCGTTGACATCGAGAGGGAGTTCGTCTGCGACGCA-- 17337837 Query 42955 CGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACG 43014 || ||||| | || || || |||||| || || ||| || |||||||| ||| | Sbjct 17337838 --CTCCCCGTCGCGCTCGTTGGGATGAACGGGGAGCTGATGAGCCAGTACATCGAGTTTG 17337895 Query 43015 TCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGT--GCC 43071 |||| || | | || || | | |||| || | |||| | | || || Sbjct 17337896 TCGCTGATCGCTTGCTCATGGC-GCTGGGCTGCAAGAAGATGTACA--ATGTTGTTAACC 17337952 Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131 ||||||||| |||||| |||||| || |||||||||||||||| ||||||||||||| Sbjct 17337953 CCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCG 17338012 Query 43132 TCGCCGACTACCAG 43145 ||| ||||||||| Sbjct 17338013 TCGGTGACTACCAG 17338026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339058349120