Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq5 118 8e-22 seq2 98.7 8e-16 seq9 91.5 1e-13 seq6 87.8 1e-12 seq8 82.4 6e-11 >seq5 Length=20807039 Score = 118 bits (130), Expect = 8e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||||||||| | ||| ||||||||| ||||||||||||||||| || Sbjct 6507209 AGACGGAGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCCAAGGTGCGG 6507268 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| |||||||| |||||||| ||||||||||| ||| || | || ||| Sbjct 6507269 CCATCCTCCAGCTGCTTGCCAGCAAATATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCC 6507328 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCATTCGACCGT 34088 |||||| ||| ||| ||| | | ||| | | || | || || || | ||| Sbjct 6507329 TTGTCCTGAATCTTTGCCTTCA-CGTTGTCAATCGTGTCTGACGACTCAACCTCTAGCGT 6507387 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || ||||| ||||| | ||| || |||||||||||||| Sbjct 6507388 AATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCAT 6507426 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || || || || || || ||| ||| |||||||||||||||||||| Sbjct 6507884 CCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCTGCG 6507943 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||| ||||| || ||||||||||| || || Sbjct 6507944 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGGA 6508003 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACT---CACACTATCAGTAGATTCG 34077 | | ||| |||||| | | | || |||| || | | | |||||| ||||| Sbjct 6508004 ATACCCTCCTTGTCC-TGAATCTTGGCTT--TGACATTGTCGATTGTATCAGAGGATTCA 6508060 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||||| || || || || ||||| ||||||||||| ||||| Sbjct 6508061 ACCTCAAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 6508110 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| || || || ||||| ||| ||||||||||| |||||||||||| Sbjct 6507656 CCTCCCCTCAGCCTAAGAACAAGGTGAAGAGTGGATTCCTTCTGAATATTGTAATCTGCC 6507715 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | |||||||| || || || || ||||||||||| || Sbjct 6507716 AACGTCCGACCATCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGGGGA 6507775 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | || ||| |||||| ||||| Sbjct 6507776 ATGCCCTCCTTGTCCTGGATTTT 6507798 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || || || |||||||||||| ||||||||| |||||||| || || Sbjct 16643737 CCTCCCCGGAGACGGAGGACAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCA 16643678 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | | || ||| | || || | |||||||||||||| || || |||||||| ||| Sbjct 16643677 AGAGTG-CGCCCATCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCC 16643624 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || || || || ||||||| || || ||| |||||||||||||||||| || || Sbjct 16644194 ACCACCCCTGAGGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGC 16644135 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || | || |||| ||||||||||| || |||||||||||||| || || Sbjct 16644134 GAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGG 16644075 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 16644074 GATGCCCTCCTTGTCC 16644059 >seq2 Length=26406337 Score = 98.7 bits (108), Expect = 8e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||||||||| || || || |||| ||||| || ||||||||||||||||||||| || Sbjct 20340458 ACCTCCTCTGAGGCGGAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGC 20340517 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 |||| ||| |||| |||| || || || |||||||| || | ||||||||| Sbjct 20340518 CAATGTGCGCCCGTCTTCCAGCTGTTTCCCAGCAAATATTAGCCTCTGCTGATC 20340571 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/236 (69%), Gaps = 18/236 (8%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || || |||| ||||| ||| ||||||||||| |||||||| ||| Sbjct 20340231 CCTCCACGAAGGCGGAGGACCAAGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCC 20340290 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| ||| |||| |||| ||||| || ||||| || || | |||||| || ||| Sbjct 20340291 AATGTGCGCCCGTCCTCCAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGCGGG 20340350 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---G 34077 | || ||| |||||| |||||| |||| ||| | ||| | | || | Sbjct 20340351 ATGCCCTCCTTGTCCTGGATTTTTGCCTTA---------ACATTGTCAATTGTGTCGGAG 20340401 Query 34078 CATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || ||| ||||| || || ||||| || || ||||||||||| ||||| Sbjct 20340402 CTCTCCACCTCCAGAGTTATGGTCTTGCCGGTAAGAGTCTTCACAAAGATCTGCAT 20340457 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || || ||| ||||||||| |||||||| || || | || Sbjct 2676573 AGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGG 2676632 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| |||||||||||||| |||||||||||||| ||| ||| | | ||| Sbjct 2676633 CCGTCCTCCAGCTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCCGGCGGGATCCCCTCC 2676692 Query 34030 TTGTCC 34035 |||||| Sbjct 2676693 TTGTCC 2676698 >seq9 Length=15534364 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || ||||| || |||| ||||| || |||||||||||||||||| || ||| Sbjct 9034774 CCACCCCTGAGCCGGAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGCC 9034715 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || | || |||||||||||||| |||||||||| ||||| ||||| Sbjct 9034714 AGTGTGCGTCCATCCTCCAATTGCTTGCCAGCAAATATCAAACGCTGTTGATC 9034662 >seq6 Length=21016138 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| || |||| |||||||| || || || ||||||||| |||||||| || || Sbjct 18969776 ACCTCCCCTGAGCCTGAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGC 18969717 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || | || |||| |||||||||||||| || || |||||||| ||| || Sbjct 18969716 CAGGGTACGTCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGG 18969657 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 18969656 GATGCCCTCCTTGTCC 18969641 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| ||| |||| ||| ||||| ||| ||||| ||||||||||| || Sbjct 17541147 CCACCCCTGAGCCTCAGAACCAAATGGAGCGTTGACTCTTTCTGGATGTTGTAATCAGCT 17541088 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| || | || ||||||||||| || ||||| || || | |||||||| || Sbjct 17541087 AATGTGCGTCCATCTTCCAATTGCTTCCCAGCAAAAATTAGCCTTTGCTGATCTGGGGGG 17541028 Query 34021 ACGCTCTCTTTGTCC 34035 | | |||||||||| Sbjct 17541027 ATACCCTCTTTGTCC 17541013 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || || |||| |||||||| || || ||| |||||||| |||||||| || || Sbjct 18970004 ACCACCCCTGAGCCTGAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGC 18969945 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | | || || | || |||| |||||||||||||| ||||| |||||||| ||| | Sbjct 18969944 AAGAGTGCGGC-CATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGG 18969886 Query 34019 GCACGCTCTCTTTGTCC 34035 | | | ||| |||||| Sbjct 18969885 GAATTCCCTCCTTGTCC 18969869 >seq8 Length=20165712 Score = 82.4 bits (90), Expect = 6e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || ||||| || ||||| || |||||||||||||||||| || | | Sbjct 3967731 CCTCCACGGAGACGAAGCACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAG-C 3967789 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || | || || | ||||||||||| || || ||||||||||| ||| || Sbjct 3967790 AAGAGTACGGCCTTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGG 3967849 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | || ||| |||||| ||| || Sbjct 3967850 AATGCCCTCCTTGTCCTGAATCTT 3967873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062341929624