Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6 161 2e-34 seq7 129 1e-24 >seq6 Length=21016138 Score = 161 bits (178), Expect = 2e-34 Identities = 310/453 (68%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| ||||| || | | ||||| || || ||| | || || || ||| Sbjct 6618222 TTCGCCGAGCGCCTCGTGGCATTCGCCTGCGTCGAGGGGATTTTCTTCTCGGGCTCGTTC 6618163 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTG---TGATGCCTGGCCTCGGTCTGTCTAAC 243405 ||||||||||| |||||| || || ||| | ||||| || ||| | | || ||| Sbjct 6618162 TGCGCCATCTTCTGGCTG---AAAAAGCGTGGCCTCATGCCGGGACTCACTTTCTCCAAC 6618106 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 ||| ||||| ||||||||||| || ||| | |||| || | ||| Sbjct 6618105 GAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCCTGCCTCCTCTATGATCTC 6618046 Query 243466 CTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 |||||| |||||| | || | || ||| | ||| || | || || || || | Sbjct 6618045 CTCCAGGGCAAGCT-CGATGAGGCTCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACAT 6617987 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 ||| | ||| ||| | |||||||| | || | ||| | ||||||||| || || Sbjct 6617986 CGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCT 6617927 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| | ||||||||||| ||||| ||||||||| | |||| ||||| || | |||| Sbjct 6617926 CATGAGCCAGTACATCGAGTTCGTCGCCGACCGCTTGCTCATGGCGCTCGGCTGCAAGAA 6617867 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 |||||||| | ||||| || | || ||||||||||| || || || || || || Sbjct 6617866 GATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGAC 6617807 Query 243705 TAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 |||||||| || ||||||||| |||| || || Sbjct 6617806 CAACTTCTTTGAGAAGCGTGTCGGTGACTACCA 6617774 >seq7 Length=22540073 Score = 129 bits (142), Expect = 1e-24 Identities = 306/454 (67%), Gaps = 10/454 (2%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||||||| | | ||||| || || || | || || || ||| Sbjct 17337577 TTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTC 17337636 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| || ||| | || |||||| Sbjct 17337637 TGCGCCATCTTCTGGCTCAAGAAGCGTGGACTCATGCCCGGGCTCACCTTCTCCAACGAG 17337696 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAGCT 243467 ||||| ||||||||||| || ||| | |||| ||| || | || | || Sbjct 17337697 CTCATCTCCCGCGACGAGGGGCTCCACTGCGACTTCGCGTGC-CTCGTCTACGAACTCCT 17337755 Query 243468 CCAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 || | |||||| || | || || ||| | || | | || || ||||| | Sbjct 17337756 CCGAAGCAAGCTTGACGAGTCC---CGCGTCCGCGAGATTGTTGCTGATGCCGTTGACAT 17337812 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCG-GCTTATTGGCATGAACTCTGAAC 243583 ||| | ||| ||| | |||||||| | ||| | || ||| |||| |||||| || | Sbjct 17337813 CGAGAGGGAGTTCGTCTGCGACGC-ACTCCCCGTCGCGCTCGTTGGGATGAACGGGGAGC 17337871 Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 | ||| | ||||||||||| || || || || ||| | |||| ||||| || | ||| Sbjct 17337872 TGATGAGCCAGTACATCGAGTTTGTCGCTGATCGCTTGCTCATGGCGCTGGGCTGCAAGA 17337931 Query 243644 AAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 | ||||||| |||||||| | || ||||||||||| || || || || || | Sbjct 17337932 AGATGTACAATGTTGTTAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGA 17337991 Query 243704 CTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 | ||||||||||| ||||| ||| |||| || || Sbjct 17337992 CCAACTTCTTCGAGAAGCGCGTCGGTGACTACCA 17338025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879830432200