Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq7 152 6e-32 seq6 138 1e-27 >seq7 Length=22540073 Score = 152 bits (168), Expect = 6e-32 Identities = 314/456 (69%), Gaps = 16/456 (4%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 17338023 GTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 17337964 Query 125818 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 125872 | || || ||||| | ||| | || || ||| || |||| | |||| Sbjct 17337963 CCAGTCGAAGGGGTTAACAACATTG---TACATCTTCTTG-CAGCCCAG-CGCCATGAGC 17337909 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 125931 | ||||| | ||| |||| ||||||| |||| ||| |||||| || | ||| Sbjct 17337908 AAGCGATCAGCGACAAACTCGATGTACTGGCTCATCAGCTCCCCGTTCATCCCAACGAGC 17337849 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | || ||||| ||||| ||| |||| || |||| || || ||||| || || || Sbjct 17337848 GCGACG-GGGAGTGCGTCGCAGACGAACTCCCTCTCGATGTCAACGGCATCAGCAACAAT 17337790 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAA-AGTCTTGAAGA-GTTCCACGGCA 126049 || | | | | | | || | | | || | ||| | | ||| | |||| | Sbjct 17337789 CTCGCGGACGCGGGACTCGTCAAGCTTGCTTCGGAGGAGT-TCGTAGACGAGGCACG-CG 17337732 Query 126050 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGC 126109 || || |||||| |||||||| ||||||||||| || || |||||| || || ||| Sbjct 17337731 AAGTCGCAGTGGAGCCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGGGC 17337672 Query 126110 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCC 126169 ||||| || |||||||| | |||||| || || || || || |||||||||||||| ||| Sbjct 17337671 ATGAGTCCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCC 17337612 Query 126170 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || || |||||||| | ||| ||||| || ||| Sbjct 17337611 TCGACGCAGGCGAACGCGACGAGCCGCTCGGCGAAG 17337576 >seq6 Length=21016138 Score = 138 bits (152), Expect = 1e-27 Identities = 311/457 (68%), Gaps = 18/457 (4%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || |||||||| |||||||| ||||| || | || | ||| |||||| Sbjct 6617776 GTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 6617835 Query 125818 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 125872 | || || ||||| | ||| | || || ||| || || | | |||| Sbjct 6617836 CCAGTCGAACGGGTTGGCGACGTTG---TACATCTTCTTG-CAGCCGAG-CGCCATGAGC 6617890 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 125931 | || || | |||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 6617891 AAGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 6617950 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | || ||||||||||| ||| |||| || |||| || || ||||| || ||||| Sbjct 6617951 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGAT 6618009 Query 125992 GGCGTGAATGGTGTCCACCCC-AGGT--CTATTGCGCAAAGTCTTGAAGAGTTCCACGGC 126048 || | | | || | | || | | | | | | | | || ||| || ||| Sbjct 6618010 CTCGCGGACGCGAGCCTCATCGAGCTTGCCCTGGAGGAGATCATAGAGGAGG--CA-GGC 6618066 Query 126049 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGG 126108 || || ||||||||||||||| ||||||||||| || || ||||| ||||| || Sbjct 6618067 GAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGTCCCGG 6618126 Query 126109 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCC 126168 |||||| || ||||| |||| |||||| || || || || || ||||||||||| || || Sbjct 6618127 CATGAGGCCACGCTTTTTCAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAAATCCC 6618186 Query 126169 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||| || || ||||| || | ||| ||||| || ||| Sbjct 6618187 CTCGACGCAGGCGAATGCCACGAGGCGCTCGGCGAAG 6618223 Score = 134 bits (148), Expect = 2e-26 Identities = 284/419 (68%), Gaps = 6/419 (1%) Strand=Plus/Plus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 ||||||| || ||||| || | ||||| ||||| || ||| | ||||| | ||| Sbjct 20727930 ACGGTGACCTGCCGATCGAACCTCCCTGGCCGGAGAAGCGCGGCATCAAGCACATCCGGC 20727989 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 | |||||| || || | |||| || || | | |||| ||||||||||| ||| Sbjct 20727990 CTGTTCGTTGCAGCAAGCACAATGACACCACTGTTCCCGGCAAAACCATCCATCTCCGTC 20728049 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGC 10952 ||||| || || ||||| || || | ||||||||| | | | | | ||||||| | Sbjct 20728050 AAGAGCTGGTTAATGGTCTGCTCCCTCTCATCATTCCC--CCCTCCGAGCCCCGCACCAC 20728107 Query 10953 GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGG 11012 | ||| | ||||| || ||||| ||||||||||| || || || || || | | Sbjct 20728108 GCTGCCTCCCGACAGCATCAATCTCATCGATGAACACAATGCAAGGCGCCTTGGCCTTTG 20728167 Query 11013 CAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAAT 11072 | || || | ||| | || || ||||||||||| || |||| || || || | Sbjct 20728168 CCTTCTCGAACAGATCCCTCACCCTGGATGCACCGACACCGACGAACAGCTCGACGAACT 20728227 Query 11073 TGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 11132 | |||| ||| || ||| || ||| || || || |||| ||| || || || | Sbjct 20728228 CCGACGCGGCGCATGAGAAGAACGGCACGCCGGCCTCTCCGGCGACGGCACGCGCCAGCA 20728287 Query 11133 GGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 11190 | |||||||||||||| || || |||| | |||||| | | |||||| ||||||| Sbjct 20728288 GCGTCTTCCCCGTCCCCGGCGGGCCGACGAGGA-GGCACCCCTTGGGGATCTTGGCACC 20728345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353510396960