Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq5 87.8 1e-12 >seq5 Length=20807039 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || ||||| || ||||||||||| ||| | | |||| || | ||| Sbjct 6507908 TGGAGGGTGGACTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGGCCGTCCTCAAGTTGC 6507967 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || | || | ||||| ||||| |||||| || |||||||| ||| ||| Sbjct 6507968 TTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGGAATACCCTCCTTGTCCTGAATCTTG 6508027 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || ||||| ||| || || | ||| ||||| || || || Sbjct 6508028 GCTTTGACATTGTCGATTGTATCAGAGGATTCAACCTCAAGGGTTATGGTCTTGCCAGTG 6508087 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 6508088 AGTGTCTTCACAAAGATCTGCAT 6508110 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || ||||||||||| ||| | || | || || | || Sbjct 16643941 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCCTGCCATCCTCGAGCTGC 16643882 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 |||||||| | |||| |||||| ||||| |||||||| |||||||| ||| ||| Sbjct 16643881 TTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTTT 16643822 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || ||| | || || ||||| | || || || | ||| || || || || || Sbjct 16643821 GC-CTTGACATTGTCAATGGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCAGT 16643763 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || |||||||| Sbjct 16643762 CAAGGTCTTAACGAAGATTTGCAT 16643739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391947731420