Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 seq2 86.0 6e-12 seq1 86.0 6e-12 >seq5 Length=20807039 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| ||||||| || || ||||| ||||| || ||||| Sbjct 6507200 CCACCACGGAGACGGAGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCC 6507259 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| || || || || |||| | || ||||||||||| ||| Sbjct 6507260 AAGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAATATGAGGCGCTGCTGGTCCGGGGGA 6507319 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || ||||| ||| || | || | || | ||||| || ||||| || Sbjct 6507320 ATGCCCTCCTTGTCCTGAATCTTTGCCTTCA-CGTTGTCAATCGTGTCTGACGACTCAAC 6507378 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || |||| ||||||||||| | || || ||||| ||||||||| Sbjct 6507379 CTCTAGCGTAATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATC 6507427 >seq2 Length=26406337 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | || || || || || || ||||| ||||| || || || Sbjct 2677017 ATGCCTCCCCTGAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCA 2677076 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || |||| || || || || | || | || |||||||| || Sbjct 2677077 GCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGG 2677136 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || |||| || | || | ||||||||||||||| Sbjct 2677137 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTC 2677195 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || |||||||| ||||| || ||||| || ||||| Sbjct 2677196 CACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 2677246 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | || || || || || || || ||||| ||||| || || || Sbjct 2676789 ATGCCTCCCCTGAGACGCAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCA 2676848 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || |||| || || || ||| | || | || ||||||||||| Sbjct 2676849 GCGAGGGTCCTGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGG 2676908 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || || |||| || | |||||||||||||| Sbjct 2676909 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCGGAAGACTCC 2676968 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || ||||| || ||||| || || || || ||||| Sbjct 2676969 ACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 2677018 >seq1 Length=32922458 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| || ||||| || || ||||| ||||| || || ||| | Sbjct 9819711 CCGCCGCGGAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 9819652 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| |||| || || || ||| | |||| || |||||||||||||| Sbjct 9819651 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 9819592 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || || || || || || | || | || | |||||| || ||||| || Sbjct 9819591 ATCCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 9819533 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||| || || || || || || || || || |||||| Sbjct 9819532 CTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATC 9819484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003132199520