Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq8 138 1e-27 seq9 136 5e-27 seq5 125 9e-24 seq7 102 1e-16 >seq8 Length=20165712 Score = 138 bits (152), Expect = 1e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | || || ||||| |||| || |||||||| || |||||| Sbjct 4128818 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTGATCC 4128759 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | ||||||||| ||||| | ||| || || || || || || ||||| ||||| ||| Sbjct 4128758 TGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTC 4128699 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| |||||||| | ||| || || |||||||||||||| || | ||| Sbjct 4128698 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACAAAGTCATAGGCACGTAGG 4128639 Query 6443 TTAAGTGCAAG 6453 || || || || Sbjct 4128638 TTCAGAGCCAG 4128628 >seq9 Length=15534364 Score = 136 bits (150), Expect = 5e-27 Identities = 136/175 (78%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 7631 ACACGACCTTGACCATCAATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCC 7690 || |||||||| | ||||| | || |||||||| ||||| ||||| |||||||| ||| Sbjct 12953954 ACGCGACCTTG-CTATCAACTACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCC 12953896 Query 7691 ATGGTGCTAACACCAAGAGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAG 7750 || || |||| ||| | |||||||||||| || || || || ||||| || || | |||| Sbjct 12953895 ATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAG 12953836 Query 7751 AAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAA 7805 ||||| | ||||| |||||||| || ||| ||||||||||| | || |||| Sbjct 12953835 AAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATTAATCGGCCAA 12953781 >seq5 Length=20807039 Score = 125 bits (138), Expect = 9e-24 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 6638 TCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCT 6697 ||||| || ||||| | ||| || || || || || || |||||||| || ||||| || Sbjct 7586156 TCACCGTCCTCAAATAGAGTGTTTTCCACGGTTGCCCCATGAATAGCGCATAGCAAAGCC 7586097 Query 6698 CCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAG 6757 | ||||| | || || || |||||||||||||| ||||| | |||||| || || || Sbjct 7586096 GCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAAT 7586037 Query 6758 CCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAA 6816 || || | |||||| | ||| || ||||||||||| || ||||| | | |||||||| Sbjct 7586036 CCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTACGCCAAAACTCCGTGCAAAGAA 7585978 >seq7 Length=22540073 Score = 102 bits (112), Expect = 1e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 8235 AAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGT 8294 ||||| |||| ||| | ||| ||||||||| ||| || |||||||| || || || |||| Sbjct 5748194 AAGGATCACCATTGCATAGCTACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGT 5748135 Query 8295 GGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACA 8354 | | || || || ||||| ||||| || ||||||||||| || ||||| ||||| | Sbjct 5748134 GCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAA 5748075 Query 8355 TGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGA 8414 | ||| || ||| || || | || || ||||| || | |||| || |||| || Sbjct 5748074 GTAAAGAATTAGAGACAGGCTCGTGAATACCATCAATATCTATTGGAGTGGCTGCGATGA 5748015 Query 8415 AAGC 8418 | || Sbjct 5748014 AGGC 5748011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622124706681280