Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq7 156 5e-33 seq6 132 6e-26 >seq7 Length=22540073 Score = 156 bits (172), Expect = 5e-33 Identities = 315/456 (69%), Gaps = 16/456 (4%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || | ||| ||| |||||| Sbjct 17338023 GTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 17337964 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 | || || ||||| | ||| | || || ||| || |||| | |||| Sbjct 17337963 CCAGTCGAAGGGGTTAACAACATTG---TACATCTTCTTG-CAGCCCAG-CGCCATGAGC 17337909 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 127404 | ||||| | ||| |||| ||||||| |||| ||| |||||| || | ||| Sbjct 17337908 AAGCGATCAGCGACAAACTCGATGTACTGGCTCATCAGCTCCCCGTTCATCCCAACGAGC 17337849 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || ||||| ||||| ||| |||| || |||| ||||| || || || || || Sbjct 17337848 GCGACG-GGGAGTGCGTCGCAGACGAACTCCCTCTCGATGTCAACGGCATCAGCAACAAT 17337790 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAA-AGTCTTGAAGA-GTTCCACAGCA 127522 || | | | | | || | | | || | ||| | | ||| | ||| || Sbjct 17337789 CTCGCGGACGCGGGACTCGTCAAGCTTGCTTCGGAGGAGT-TCGTAGACGAGGCAC-GCG 17337732 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || |||||| |||||||| ||||||||||| || || |||||| || || ||| Sbjct 17337731 AAGTCGCAGTGGAGCCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGGGC 17337672 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 ||||| || |||||||| | |||||| || || || || ||||| ||||||||||||||| Sbjct 17337671 ATGAGTCCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCC 17337612 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || || || |||||||| | || |||||||| ||| Sbjct 17337611 TCGACGCAGGCGAACGCGACGAGCCGCTCGGCGAAG 17337576 >seq6 Length=21016138 Score = 132 bits (146), Expect = 6e-26 Identities = 310/457 (68%), Gaps = 18/457 (4%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| |||||||| |||||||| ||||| || | ||| ||| |||||| Sbjct 6617776 GTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 6617835 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 | || || ||||| | ||| | || || ||| || || | | |||| Sbjct 6617836 CCAGTCGAACGGGTTGGCGACGTTG---TACATCTTCTTG-CAGCCGAG-CGCCATGAGC 6617890 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 127404 | || || | |||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 6617891 AAGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 6617950 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || ||||||||||| ||| |||| || |||| ||||| || || || ||||| Sbjct 6617951 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGAT 6618009 Query 127465 GGCGTGAATAGTGTCCACCCC-AGGT--CTATTGCGTAAAGTCTTGAAGAGTTCCACAGC 127521 || | | || | | || | | | | | | | | || ||| || || Sbjct 6618010 CTCGCGGACGCGAGCCTCATCGAGCTTGCCCTGGAGGAGATCATAGAGGAGG--CAG-GC 6618066 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 || || ||||||||||||||| ||||||||||| || || ||||| || || || Sbjct 6618067 GAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGTCCCGG 6618126 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 |||||| || ||||| |||| |||||| || || || || ||||| |||||||| ||||| Sbjct 6618127 CATGAGGCCACGCTTTTTCAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAAATCCC 6618186 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||| || || ||||| || | || |||||||| ||| Sbjct 6618187 CTCGACGCAGGCGAATGCCACGAGGCGCTCGGCGAAG 6618223 Score = 132 bits (146), Expect = 6e-26 Identities = 286/422 (68%), Gaps = 12/422 (3%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 ||||||| || ||||| || | ||||| ||||| || ||| | ||||| | ||| Sbjct 20727930 ACGGTGACCTGCCGATCGAACCTCCCTGGCCGGAGAAGCGCGGCATCAAGCACATCCGGC 20727989 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCG---AAGCCATCCATCTCA 12806 | |||||| || || | |||| || || | ||| || || ||||||||||| Sbjct 20727990 CTGTTCGTTGCAGCAAGCACAATGACACCACT---GTTCCCGGCAAAACCATCCATCTCC 20728046 Query 12807 GTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCAC 12864 |||||||| || || ||||| || || | ||||||||| | | | | | ||||||| Sbjct 20728047 GTCAAGAGCTGGTTAATGGTCTGCTCCCTCTCATCATTCCC--CCCTCCGAGCCCCGCAC 20728104 Query 12865 TGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCAC 12924 || ||| | ||||| || ||||| || || ||||| || || || || || | Sbjct 20728105 CACGCTGCCTCCCGACAGCATCAATCTCATCGATGAACACAATGCAAGGCGCCTTGGCCT 20728164 Query 12925 GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAA 12984 || || || | ||| | ||| || ||||||||||| || |||| ||| || | Sbjct 20728165 TTGCCTTCTCGAACAGATCCCTCACCCTGGATGCACCGACACCGACGAACAGCTCGACGA 20728224 Query 12985 AATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGA 13044 | | | |||| ||| || ||| || ||| || || || |||| ||| || || | Sbjct 20728225 ACTCCGACGCGGCGCATGAGAAGAACGGCACGCCGGCCTCTCCGGCGACGGCACGCGCCA 20728284 Query 13045 GGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGT-GGGATCCTGGCA 13103 | || |||||||||||||| || || |||| | |||||| | | |||||| ||||| Sbjct 20728285 GCAGCGTCTTCCCCGTCCCCGGCGGGCCGACGAGGA-GGCACCCCTTGGGGATCTTGGCA 20728343 Query 13104 CC 13105 || Sbjct 20728344 CC 20728345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507107973920