Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6 199 6e-46 seq7 188 1e-42 >seq6 Length=21016138 Score = 199 bits (220), Expect = 6e-46 Identities = 535/805 (66%), Gaps = 26/805 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || |||||||||||||||| || ||| || ||||| | |||| ||||| Sbjct 6617791 CTTCTCAAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGGTT 6617850 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| | ||||| ||| ||||| | ||| || || || || Sbjct 6617851 GGCGACGTTGTACATCTTCTTGCAGCCGAGCGCCATGAGCAAGCGGTCGGCGACGAACTC 6617910 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || | ||| || || | ||| ||||||||||| || | Sbjct 6617911 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGACGGGGAGCGCGTCGCA 6617970 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGTTCGTACC 159887 | |||||| |||| || ||||| || |||| || |||| ||| ||| || | | Sbjct 6617971 GACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGCG-GACGCGAGCCTCAT 6618029 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | |||||||| | | | || | | |||||||| || ||||||||||| || |||| Sbjct 6618030 CGAGCTTGCCCTGGAGGAGATCAT---AGAGGAGGCAGGCGAAGTCGCAGTGGAGACCCT 6618086 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||||| ||||||||| | |||| |||||||||| |||||| ||| | Sbjct 6618087 CGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGTCCCGGCATGAGGCCACGCTTTTTCA 6618146 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| |||| || | | | | || || |||||||| ||| || || ||| Sbjct 6618147 GCCAGAAGATGG-CGCAGAACGAGCCCGAGAAGAAAATCCCCTCGACGCAGGCGAATGCC 6618205 Query 160067 ACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 ||||| | ||| | || ||| | | | | | | |||| | ||||||| || || Sbjct 6618206 ACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCATCGCATGGCCCAATCGGC 6618261 Query 160126 CTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 | ||||| | ||||| | | |||| |||| || | | ||||| ||| Sbjct 6618262 C----TTGCGGCGGACGGCGGGGACGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTCGA 6618317 Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 | || ||| || | | |||| ||||||||| || | ||| | || |||| Sbjct 6618318 CGTCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGA 6618377 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACC 160301 |||| ||||| ||| |||||| ||||||| |||||| || |||||| Sbjct 6618378 TGGCGATCTGGAAGCCGTAGAATGCCCTCGCCTCGGCGACCTGCACGTCGGACATGAACC 6618437 Query 160302 TTTGAC-CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGA 160360 | ||| | || || | || | ||||||| ||||| ||||| || | |||||| Sbjct 6618438 -TGGACGCGAGGTTCTCGAGCACGATTCCGTCGGACGCCGCGAAGAAGGCGAGCACGTGG 6618496 Query 160361 GAGATGAAATGTCTCTCGTCTTTGTTG--AGTCTCTTTTCCCAGTGTGTCACGTCTTGGG 160418 |||||||| || | |||| || | || || || | |||||||| | |||| || Sbjct 6618497 GAGATGAAGTGGCGCTCG--TTGGGTGAAAGCGTCGTGTCCCAGTGGCGCGCGTCGCCGG 6618554 Query 160419 CCAAATCAACCTCTTCCGCGCTCCA 160443 | || ||||| ||||| |||| Sbjct 6618555 AGAGGTCGACCTCCTCCGCCGTCCA 6618579 >seq7 Length=22540073 Score = 188 bits (208), Expect = 1e-42 Identities = 496/743 (67%), Gaps = 28/743 (4%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || ||| || ||||| | |||| ||||| Sbjct 17338008 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAAGGGGTT 17337949 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 || | || |||| | || || ||| ||||| | || || ||||| || Sbjct 17337948 AACAACATTGTACATCTTCTTGCAGCCCAGCGCCATGAGCAAGCGATCAGCGACAAACTC 17337889 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | |||| |||| | ||| ||||| | ||| |||||||| || || | Sbjct 17337888 GATGTACTGGCTCATCAGCTCCCCGTTCATCCCAACGAGCGCGACGGGGAGTGCGTCGCA 17337829 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGT---TCGT 159884 | |||||| |||| || || || || || | ||||||| ||| ||| || |||| Sbjct 17337828 GACGAACTCCCTCTCGATGTCAACGGCATCAGCAACAATCTCGCG-GACGCGGGACTCGT 17337770 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | |||||| | | | || | | | ||||||||| ||||||||||| || | Sbjct 17337769 ---CAAGCTTGCTTCGGAGGAGTTCGT---AGACGAGGCACGCGAAGTCGCAGTGGAGCC 17337716 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| || ||||||| ||||||||| | | |||| || ||||||| |||||| | Sbjct 17337715 CCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGGGCATGAGTCCACGCTTCT 17337656 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| |||| ||| | | | | || ||||||||||| ||| || ||| Sbjct 17337655 TGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCAGGCGAAC 17337597 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 || ||||||| ||| | || ||| | | | | | | |||| | | ||||| || Sbjct 17337596 GCGACGAGCCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCAGCGCATCGCCCAGTC 17337541 Query 160123 AGCCTTCTTTGCGATGCACGGCATG--CGCT--CGACGGCGTTAAACAATCTGTCCTGCT 160178 ||| ||||| | ||||| | || | ||| |||| || | | ||||| || Sbjct 17337540 GGCC----TTGCGGCGGACGGCCGGGACGGTGACGATGGCGCGGAAGAGGCGGTCCTTCT 17337485 Query 160179 CCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTT 160238 | | || ||| || | | |||| ||||||||| || | ||| | || | Sbjct 17337484 CGACGTCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCT 17337425 Query 160239 CGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGA 160298 ||||||| ||||| ||| |||||| ||||||| |||||| || ||| Sbjct 17337424 CGATGGCGATCTGGAAGCCGTAGAACGCCCTCGCCTCGGCGACCTGCACGTCGGACATGA 17337365 Query 160299 ACCTTTGAC-CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACG 160357 ||| | ||| | || || | || | ||||||| ||| || ||||| || | |||| Sbjct 17337364 ACC-TGGACGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACG 17337306 Query 160358 TGAGAGATGAAATGTCTCTCGTC 160380 || || | ||| || | |||||| Sbjct 17337305 TGGGACACGAAGTGACGCTCGTC 17337283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795155080726720