Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq8 102 3e-16 seq5 96.9 1e-14 seq2 96.9 1e-14 seq3 95.1 5e-14 seq9 91.5 6e-13 >seq8 Length=20165712 Score = 102 bits (112), Expect = 3e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||||| || ||||| || || || || || || || || || ||||| ||||| || || Sbjct 3967729 ATGAAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCCTTGAGGTTGAGTCGTCA 3967670 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || ||||| ||||||||||| || ||||||||||| Sbjct 3967669 GACACCATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAAGGGATCCCTCCTGATCAG 3967610 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || ||||| || || | ||| | || || || ||| Sbjct 3967609 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGAAGGCCGTACTCTTGCTGACTACAAT 3967550 Query 391230 ATTGATAAGGA 391240 ||| | ||||| Sbjct 3967549 ATTCAGAAGGA 3967539 >seq5 Length=20807039 Score = 96.9 bits (106), Expect = 1e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| || || || || ||||||||||||||| | ||| || |||||| |||||||| Sbjct 8159803 GCAGTGATCACAGTCCCTGCTTATTTCAATGATTCGCAAAGGACAGCAACCAAAGATGCT 8159744 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGC 451434 || | |||||||| || | ||||| || || || ||||||||||| ||||| Sbjct 8159743 GGCCGGATTGCTGGGTTGGAAGTTCTCCGTATCATAAATGAACCTACTGCAGC 8159691 >seq2 Length=26406337 Score = 96.9 bits (106), Expect = 1e-14 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||| | || || ||||| || || || ||| ||| |||| | ||| | | || Sbjct 23823947 GTTTTGACCAAGATGAAGGAGACTGCTGAATCATACCTTGGCAAAACTGTTTCAAAGGCT 23823888 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||| ||||| ||||||||||||||||| || || || ||||| || ||||| || Sbjct 23823887 GTGATTACAGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCAACCAAGGATGCTGGT 23823828 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | |||||||| | |||| | | || || |||||||| || || |||||||| | Sbjct 23823827 CGCATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCTGTCC 23823768 Query 451445 TATGGA 451450 |||||| Sbjct 23823767 TATGGA 23823762 >seq3 Length=29602667 Score = 95.1 bits (104), Expect = 5e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 || ||||| |||||||| ||| || |||| | || | | || || |||||| Sbjct 667267 AAGATGAAGGAAACAGCTGAATCTTACCTTGGCAAATCTATTTCCAAAGCTGTGATTACT 667208 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 ||||| ||||||||||||||||| || || || || || || ||||| || | |||||| Sbjct 667207 GTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCTGGTCGCATTGCT 667148 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 || | |||| | | || || |||||||| || || |||||||| | |||||| Sbjct 667147 GGACTTGATGTCCAAAGGATCATCAATGAACCCACTGCTGCTGCTCTGTCTTATGGA 667091 >seq9 Length=15534364 Score = 91.5 bits (100), Expect = 6e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||| || || ||||| ||||| ||||| || |||| | || | | || Sbjct 12043046 GTTCTCACCAAGATGAAGGAAACTGCAGAGGCTTACCTTGGCAAAACTGTCTCCAAGGCT 12042987 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || |||||||| || ||||||||||||||||| || || || || || || ||||| || Sbjct 12042986 GTTATTACTGTCCCAGCTTATTTCAATGATGCTCAGCGCCAGGCTACCAAGGATGCTGGT 12042927 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 |||||||| || | || | | ||||| |||||||| || || || ||||| || Sbjct 12042926 AGAATTGCTGGACTAGAGGTGATGAGGATTATCAATGAACCCACTGCCGCAGCTCTGTCA 12042867 Query 451445 TATGG 451449 ||||| Sbjct 12042866 TATGG 12042862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975718096233296