Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq11 158 9e-33 seq12 114 1e-19 seq9 93.3 3e-13 >seq11 Length=21046960 Score = 158 bits (174), Expect = 9e-33 Identities = 680/1063 (64%), Gaps = 24/1063 (2%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| ||| || || |||||||||||||| | ||||| || ||||||||| || Sbjct 14354071 GCAGACACGTTCAGGATACCATTGGCATCAATGTCAAAGCACACAGTAATTTGAGGAACA 14354012 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || || ||||||| ||||| || | | ||| | ||||| || || || Sbjct 14354011 CCCCTGGGAGCAGGAGGGATGCCAGATAGCTCAAACTTGCCCAGCAGGTTGTTGTCACGG 14353952 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | | |||||||| ||| |||||| || ||| || || || || || Sbjct 14353951 GTCCTGGTCCTCTCACCCTCATAAACCTGGATAAGGACACCAGGCTGGTTGTCAGAGTAG 14353892 Query 517439 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCT----ATCAATAATAT 517493 || | || || ||| || || || || || ||||| || ||||| | Sbjct 14353891 GTGGAGAAGAC-CTGCTCCTTCTTGGTGGGGATGGTGGTGTTCCTCGGGATCAAGACA-- 14353835 Query 517494 TGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 517553 ||||| | |||||| || || || ||||| |||||||| ||||||||||| | |||| Sbjct 14353834 --GTCATGACACCACCAGCAGTCTCCAAACCGAGAGAAAGTGGAGTGACATCCAACAGGA 14353777 Query 517554 CAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 517613 | || || | || |||| || |||| || || || || || | |||||| | Sbjct 14353776 GGAGATCCTGGACCTTCTCATTGCCTTCACCACTCAGGATGGCAGCCTGGACAGCAGCTC 14353717 Query 517614 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 517673 |||| |||||||| ||||| || || | | | || | || ||||| || || | Sbjct 14353716 CATAAGCAACAGCCTCATCTGGGTTGATGTTCTTGCAAAGCTCCTTGCCATTAAAGAAGT 14353657 Query 517674 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 517733 ||| || || ||| | || || | || || || ||||| | |||| |||| Sbjct 14353656 CCTGAAGGAGCTGCTGCACCCTTGGGATCCTAGTGGAGCCACCAACAAGGACAACATCAT 14353597 Query 517734 GCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCC 517792 | || ||| | || |||| |||| |||| | || || || || || | | | Sbjct 14353596 GAACA-GTGCTCTTGTCCATCTTTGCATCCCTCAGGCACTTCTCCACAGGCTCCATGCAC 14353538 Query 517793 GCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA 517852 || || | || || || || || | || | || | || | || || Sbjct 14353537 TTCCTGAAGAGATCCATGTTGAGCTCCTCAAACCTGGCACGGGTGATGGTCG-AGTAGAA 14353479 Query 517853 -TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 517911 ||||| || || ||| ||||||| ||||| ||||| |||| | || || || | Sbjct 14353478 GTCAATGCCCTCATACAGTGAATCAATCTCAATGGTAGTCTGAGCAGTGGAGGAGAGAGT 14353419 Query 517912 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTC 517969 | || || | ||||| || ||||| || || | | || | | | ||| | | Sbjct 14353418 CCTCTTCGCCCTCTCACAAGCCGTCCTCAGCCTCCTGAGAGCCCTGG--GGTTGCCAGTG 14353361 Query 517970 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 518029 | ||| | |||| ||| ||||| || |||| ||| | | || | ||| || ||| Sbjct 14353360 ATATCCTTCTTATTTTTCCTCTTAAATTCTTGCACAAAGTGGTTAACCATACGGTTGTCA 14353301 Query 518030 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 518089 ||||||||||| || | | ||| | || | || || | || | || | || || Sbjct 14353300 AAATCTTCACCACCAAGGTGAGTGTCACCAGCTGTCGCCTTGACCTCAAAGATACCCTCC 14353241 Query 518090 TCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 518149 |||| | | || | |||||| ||| ||||| || | ||||| || || || ||| Sbjct 14353240 TCAATGGTAAGGAGGGAGACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACGTTC 14353181 Query 518150 ATTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 518203 | || | | ||| || || ||||||||||| |||| ||| ||||||||||| Sbjct 14353180 TTCTCACCGACGCTGGTGGCCTTCTTGTCAAGACCATAAGCAATAGCTGCAGCAGTTGGC 14353121 Query 518204 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 518263 ||||| || || | || ||||||||||||||||| ||| ||||| || || || || Sbjct 14353120 TCATTGATGATACGCATGACATTAAGACCAGCAATCACTCCAGCATCCTTGGTAGCCTGC 14353061 Query 518264 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || || || || || || ||||||||||| | ||| |||| Sbjct 14353060 CTCTGGGAGTCATTGAAGTAGGCAGGAACAGTGACAACTGCAT 14353018 Score = 138 bits (152), Expect = 9e-27 Identities = 533/827 (64%), Gaps = 24/827 (3%) Strand=Plus/Minus Query 517495 GGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 517554 |||||| | ||||| || ||||| ||||||||||| || || || ||||| | |||| Sbjct 20824577 GGTCATGACTCCACCAGCAGTTTCCAAACCAAGAGAGAGTGGGGTAACATCCAACAGGAG 20824518 Query 517555 AATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 517614 | | || | || || | | |||| || || || ||||| | |||||| || Sbjct 20824517 GAGGTCCTGGACCTTCTCGTTGCCCTCACCACTCAGGATGGCAGCTTGGACAGCAGCTCC 20824458 Query 517615 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT 517674 ||| |||||||| ||||| || || | | | || | || |||||||| || | Sbjct 20824457 ATAAGCAACAGCCTCATCTGGGTTGATGTTCTTGCACAGCTCCTTGCCATTGAAGAAGTC 20824398 Query 517675 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 ||| || || ||| | || || | || || || ||||| | |||| ||||| Sbjct 20824397 CTGAAGGAGCTGCTGCACCCTCGGGATCCTAGTGGAGCCACCAACAAGAACAACATCATG 20824338 Query 517735 CACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCG 517793 || ||| | || |||| || | |||| | || ||||| || || | || | Sbjct 20824337 AACA-GTGCTCTTGTCCATCTTAGCATCCCTGAGGCACTTCTCAACAGGCTCCATACACT 20824279 Query 517794 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAAT 517853 || || | || || || || || | || | || | || | ||| Sbjct 20824278 TCCTGAAGAGATCCATGTTGAGCTCCTCAAACCTGGCACGGGTGATGGTTGAGTAGAAAT 20824219 Query 517854 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG---AGTCGAAGAAGATAGTG 517910 |||| || || ||| ||||||| ||||| || || || ||| || || || ||| Sbjct 20824218 CAATGCCCTCATACAGGGAATCAATCTCAATGGTGGTCTGGGCAGTGGAGGA-GAGAGTC 20824160 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AGGCTT----TTGCTGATTG 517965 | | || || | ||||| |||||||| | || | | || | | |||| | | | Sbjct 20824159 CTC--TTCGCCCTCTCACAAGCTGTCCTCAACCTCCTGAGAGCCCTGGGGTTGCCGGT-G 20824103 Query 517966 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT 518025 || ||| | || | ||||||||||| |||| ||| | | || | ||| || Sbjct 20824102 AT----ATCCTTCTTGTTCTTTCTCTTGAATTCTTGTACAAAGTGGTTAACCATACGGTT 20824047 Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085 |||||||||||||| || | | ||| | || | || || | || | || | || Sbjct 20824046 GTCAAAATCTTCACCACCAAGGTGAGTGTCACCAGCTGTCGCCTTGACCTCAAAGATACC 20823987 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 || |||| | | || | |||||| ||| ||||| || | ||||| || || || Sbjct 20823986 TTCCTCAATGGTAAGGAGGGAGACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGAAC 20823927 Query 518146 ATTCATTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 |||| | || | ||| || || |||||||||||||||| ||| |||||||| Sbjct 20823926 ATTCTTCTCACCAACGCTGGTGGCCTTCTTGTCAAGACCATACGCAATAGCTGCAGCAGT 20823867 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 ||| || || || || | || ||||||||||||||||| ||| ||||| || ||||| Sbjct 20823866 TGGCTCGTTGATGATACGCATGACATTAAGACCAGCAATCACTCCAGCATCCTTGGTGGC 20823807 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || || || || || || || ||||||||||| | || |||| Sbjct 20823806 CTGCCTCTGAGAGTCATTGAAGTAGGCAGGAACAGTGACGACTGCAT 20823760 Score = 86.0 bits (94), Expect = 5e-11 Identities = 142/205 (69%), Gaps = 10/205 (5%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGT-- 518165 |||||| ||||||||||| | |||||| | || || || | |||||| |||| Sbjct 3839294 ACATCAAAAGTTCCACCACCAAGATCAAAGACGAGAACTATCCTCCCTTTGT--TGGTGA 3839237 Query 518166 ------TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 518219 | || |||||||||||||| | ||||||||||| ||||| || || || | || Sbjct 3839236 CAGGCATATTCTCAAGACCATACGCGAGGGCAGCAGCAGTGGGTTCGTTGATGATGCGCA 3839177 Query 518220 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 518279 || || || || ||||| ||||| ||| | ||||| || | || || | ||| | Sbjct 3839176 TGACGTTGAGGCCGGCAATGGCGCCTGCGTCTATGGTGGCCTGCCGCTGAGAGTTGTTGA 3839117 Query 518280 AATATGCAGGAACAGTAATAACGGC 518304 | || ||||||| || | ||||| Sbjct 3839116 AGTAGACAGGAACGGTGGTGACGGC 3839092 >seq12 Length=17761961 Score = 114 bits (126), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 518101 AAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 518160 ||||| |||||| ||| |||||||| | ||||| || || |||||| | || | Sbjct 14542677 AAGAGAGACATCAAAGGTACCACCACCAAGGTCAAAGATGAGGACATTCTTCTCACCAAC 14542618 Query 518161 T-TGGT-----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 |||| | || ||||||||||| |||| |||||||| ||||| ||||| || || Sbjct 14542617 ACTGGTAGCCTTCTTGTCAAGACCATAGGCAATGGCAGCAGCTGTTGGCTCATTGATGAT 14542558 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 | || ||||| || |||||||| ||| ||||| || || || || || ||||| || Sbjct 14542557 ACGCATGACATTGAGGCCAGCAATGACTCCGGCATCCTTGGTAGCCTGCCTCTGTGAGTC 14542498 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGC 518304 ||| || || ||||| || || | |||||| Sbjct 14542497 GTTGAAGTAAGCAGGCACTGTCACAACGGC 14542468 >seq9 Length=15534364 Score = 93.3 bits (102), Expect = 3e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | ||| || ||||| |||||||| ||||| |||| || | || |||||| Sbjct 12042862 CCATATGACAGAGCTGCGGCAGTGGGTTCATTGATAATCCTCATCACCTCTAGTCCAGCA 12042921 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||||| || ||||| || || || || | || | ||| || ||||| || || |||||| Sbjct 12042922 ATTCTACCAGCATCCTTGGTAGCCTGGCGCTGAGCATCATTGAAATAAGCTGGGACAGTA 12042981 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTT 518352 ||||| || | | || ||| |||| ||||| ||| |||| ||||| || Sbjct 12042982 ATAACAGCCTTGGAGACAGTTTTGCCAAGGTAAGCCTCTGCAGTTTCCTTCATCTT 12043037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780821804520472