Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq7 150 2e-31 seq6 132 6e-26 >seq7 Length=22540073 Score = 150 bits (166), Expect = 2e-31 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 17337576 CTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTT 17337635 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 17337636 CTGCGCCATCTTCTGGCTCAAGAAGCGTGGACTCATGCCCGGGCTCACCTTCTCCAACGA 17337695 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| |||||| Sbjct 17337696 GCTCATCTCCCGCGACGAGGGGCTCCAC 17337723 >seq6 Length=21016138 Score = 132 bits (146), Expect = 6e-26 Identities = 284/415 (68%), Gaps = 22/415 (5%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 ||||| || | ||||| || || |||||| ||||||| | ||| | |||||||| Sbjct 20727942 CGATCGAACCTCCCTGGCCGGAGAAGCGCGGCATCAAGCACATCCGGCCTGTTCGTTGCA 20728001 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || | |||| | ||| |||| | |||||||||||||||| ||||| ||||||| Sbjct 20728002 GCAAGCACAATGACACCACTGTTCCCGG--CAAAACCATCCATCTCCGTCAAGAGCTGGT 20728059 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 16060 |||| || || |||| ||||||||| | | | | | || |||| || ||| | || Sbjct 20728060 TAATGGTCTGCTCCCTCTCATCATTCCC--CCCTCCGAGCCCCGCACCACGCTGCCTCCC 20728117 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 16116 || |||||||||||||| ||||| || ||||| || ||| || || | | Sbjct 20728118 GACAGCATCAATCTCATCGATGAACACAATGCAAGGCGCCTTGGCCTTTGCCTTC----T 20728173 Query 16117 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 | || ||||||| ||| || | || || ||||| || |||| ||| || || | | Sbjct 20728174 CGAACAGATCCC--TCACCCTGGATGCACCGACACCGACGAACAGCTCGACGAACTCCGA 20728231 Query 16175 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 16234 |||| ||| || ||| || || | || || || | ||| || || || || || Sbjct 20728232 CGCGGCGCATGAGAAGAACGGCACGCCGGCCTCTCCGGCGACGGCACGCGCCAGCAGCGT 20728291 Query 16235 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 16288 ||| ||||| || ||| || |||||| |||||| | | || |||||||| || Sbjct 20728292 CTTCCCCGTCCCCGGCGGGCCGACGAGGA-GGCACCCCTTGGGGATCTTGGCACC 20728345 Score = 127 bits (140), Expect = 3e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| ||| | ||||| || || || ||||| || |||||||| || || || Sbjct 6618223 CTTCGCCGAGCGCCTCGTGGCATTCGCCTGCGTCGAGGGGATTTTCTTCTCGGGCTCGTT 6618164 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | ||||| || ||||| || |||||||| || ||| ||||||||||| Sbjct 6618163 CTGCGCCATCTTCTGGCTGAAAAAGCGTGGCCTCATGCCGGGACTCACTTTCTCCAACGA 6618104 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| |||||| Sbjct 6618103 GCTCATCTCCCGCGACGAGGGTCTCCAC 6618076 Score = 96.9 bits (106), Expect = 4e-15 Identities = 232/343 (68%), Gaps = 20/343 (6%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCA 15974 ||| ||||||||| | | || || || || || |||| ||| || |||||| | || Sbjct 18387644 ATCCAGGATATCAGCCCTGTTGGTGGCAGCTATAACAATAATTCCAGTGTTTCCCT--CA 18387701 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 |||||||||||||| || | | ||| || | ||| || |||| |||||| || | Sbjct 18387702 AAACCATCCATCTCAGTAAGTAACTGATTCAAAGTCTGCTCCCTTTCATCGTTTCC---- 18387757 Query 16035 ATACCACCAGCA-CTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 ||||||| | ||| | |||| |||| || ||||| || ||||||| || || Sbjct 18387758 --ACCACCAATACCTGTCCCTCTTTGCCTTCCAACAGCATCGATTTCATCAACAAATACA 18387815 Query 16089 ATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCAC 16147 ||||| || ||| | | | | ||| ||| ||||| || || || ||| || || Sbjct 18387816 ATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACTCGGGAGGCACCAAC 18387874 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATT 16206 || ||||||||||||||||| | | | | | || | || || || ||| || || Sbjct 18387875 TCCCACAAACATCTCCACAAACTCAGATCCTG-ATATCGAGAAAAACGGCACACCAGCTT 18387933 Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | || ||||| || ||| || | |||||||| || || || Sbjct 18387934 CTCCTGCAATAGCCTTGGCAAGCAAGGTCTTACCAGTTCCAGG 18387976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742306888640