Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 118 1e-21 seq7 102 1e-16 >seq6 Length=21016138 Score = 118 bits (130), Expect = 1e-21 Identities = 311/470 (66%), Gaps = 6/470 (1%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| | ||||| ||||| || || ||||||| | ||| | ||| || || Sbjct 20727942 CGATCGAACCTCCCTGGCCGGAGAAGCGCGGCATCAAGCACATCCGGCCTGTTCGTTGCA 20728001 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | | ||| | | | | ||||| ||||| || || | |||||||| Sbjct 20728002 GCAAGCACAATGACACCACTGTTCCCGGCAAAACCATCCATCTCCGTCAAGAGCTGGTTA 20728061 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCGAACGCTTCTTACCGA 11680 || ||||| || | |||||| || | | | | || || ||||| | | |||| Sbjct 20728062 ATGGTCTGCTCCCTCTCATCATTCCCC--CCTCCGAGCCCCGCACCACGCTGCCTCCCGA 20728119 Query 11681 CAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAA 11740 |||| ||||||||||||||||| || || || || ||||| ||||| ||||| | Sbjct 20728120 CAGCATCAATCTCATCGATGAACACAATGCAAGGCGCCTTGGCCTTTGCCTTCTCGAACA 20728179 Query 11741 GTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAAC 11800 | || | || | || || ||||| ||||||| ||| ||||| | | || | | Sbjct 20728180 GATCCCTCACCCTGGATGCACCGACACCGACGAACAGCTCGACGAACTCCGACGCGGCGC 20728239 Query 11801 ACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCC 11859 | ||| | ||| || || | ||| || |||| ||| || || || || ||||| ||| Sbjct 20728240 A-TGAGAAGAACGGCACGCCGGCCTCTCCGGCGACGGCACGCGCCAGCAGCGTCTTCCCC 20728298 Query 11860 GTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAG 11919 || || || | || |||| ||| || ||||||||||||||| | ||| Sbjct 20728299 GTCCCCGGCGGGCCGACGAGGAGGCACCCCTTGGGGATCTTGGCACCTAAAGCTGTGTAC 20728358 Query 11920 CGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 || || ||||| ||||| || || | ||||| || || |||||| Sbjct 20728359 TTGTCGGGATTCTTAAGGAAATCGACGACCTCCTGCAGCTCGAGCTTGGC 20728408 Score = 111 bits (122), Expect = 2e-19 Identities = 253/375 (67%), Gaps = 8/375 (2%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || | |||||| || || | ||||| || || |||||||| ||| Sbjct 5547601 CGGTCGAACCGTCCCGCGCGGAGCAGCGCCGCGTCAAGGATTTCCGGTCGGTTTGTCGCG 5547660 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || || || | | ||| | || | ||| |||||||| || |||||||||||||| Sbjct 5547661 GCGATCACGATGACGCCGCTGTCGCCGCTGAACCCGTCCATCTCGGTGAGAAGCTGGTTC 5547720 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCGAACGCTTCTTACCGA 11680 | |||||| || | ||| ||||| || | | | || | | |||| | | || | Sbjct 5547721 AGCGTCTGCTCCCTCTCGTCGTT--CCCGCCTCCGATCCCCGTCCCTCGCTGCCTCCCCA 5547778 Query 11681 CAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAA 11740 | ||||| ||||| |||||||| |||| ||||| ||| || |||| | ||| | Sbjct 5547779 CGGCGTCGATCTCGTCGATGAACACGAGGCACGGCGCGTTCGCCTTCGCCTTGTTGAACA 5547838 Query 11741 GTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CGGCAGA 11798 || | || ||| ||| || || || ||||||||||| | ||| | | | | ||| Sbjct 5547839 AATCCCTCACCCGCGACGCGCCGACGCCGACGAACATCTCGATGAACTCGGATCCGGAGA 5547898 Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 | ||| ||| || ||| | ||| || ||||||||| || || || ||||| || Sbjct 5547899 GC-GAGAA-GAACGGCACACCCGCCTCGCCGGCGATGGCTTTCGCCAGCAGCGTCTTCCC 5547956 Query 11859 CGTACCAGGTGCACC 11873 ||| || || | ||| Sbjct 5547957 CGTCCCGGGCGGACC 5547971 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 |||||| ||| ||||||| || || ||||| || || ||||||||||| || || || Sbjct 2853062 CGTCGGCTGTATATGTTAGATGTATAAGGTTCAAAGCATTCATTGTTGCCAAGAATCTGA 2853121 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 ||||||||| |||||||| ||||| | |||||| ||||| Sbjct 2853122 CTAGTGGAAGCAGTGGGCATTGGAGCAACTAGAAGAGAGTTTC 2853164 >seq7 Length=22540073 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || ||||| || || || ||||||||||| || |||| || || ||||||||||| Sbjct 17337722 TGGAGCCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGGGCATGAGTCCA 17337663 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||| ||||| || ||| Sbjct 17337662 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCAG 17337603 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| || ||||| || || Sbjct 17337602 GCGAACGCGACGAGCCGCTCGGCGAA 17337577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975911653600