Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6 134 2e-26 seq7 118 1e-21 >seq6 Length=21016138 Score = 134 bits (148), Expect = 2e-26 Identities = 279/409 (68%), Gaps = 10/409 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 ||||| || | ||||| || || |||||| ||||||| | ||| | ||||| || Sbjct 20727942 CGATCGAACCTCCCTGGCCGGAGAAGCGCGGCATCAAGCACATCCGGCCTGTTCGTTGCA 20728001 Query 9252 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309 || | |||| | ||| |||| | |||||||||||||||| ||||| || |||| Sbjct 20728002 GCAAGCACAATGACACCACTGTTCCCGG--CAAAACCATCCATCTCCGTCAAGAGCTGGT 20728059 Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9367 |||| || || |||| ||||||||| | | | | | || |||| || ||| | || Sbjct 20728060 TAATGGTCTGCTCCCTCTCATCATTCCC--CCCTCCGAGCCCCGCACCACGCTGCCTCCC 20728117 Query 9368 CACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427 || |||||||||||||| ||||| ||||| || || || | || | || || Sbjct 20728118 GACAGCATCAATCTCATCGATGAACACAATGCAAGGCGCCTTGGCCTTTGCCTTCTCGAA 20728177 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 ||||| | ||||| || || ||||| || |||| ||| || || | | |||| Sbjct 20728178 CAGATCCCTCACCCTGGATGCACCGACACCGACGAACAGCTCGACGAACTCCGACGCGGC 20728237 Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 ||| || ||| || || | || || || | ||| || || || || ||||| || Sbjct 20728238 GCATGAGAAGAACGGCACGCCGGCCTCTCCGGCGACGGCACGCGCCAGCAGCGTCTTCCC 20728297 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCC 9595 ||| || ||| || |||||| |||||||| | || |||||||| || Sbjct 20728298 CGTCCCCGGCGGGCCGACGAGGA-GGCACCCCTTGGGGATCTTGGCACC 20728345 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||||||||| || ||||| || || || || ||||| || || |||||||| || Sbjct 6618076 GTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGTCCCGGCATGAGGCC 6618135 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||| |||| ||| | || |||||||| || || |||||||| || ||||| || || Sbjct 6618136 ACGCTTTTTCAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAAATCCCCTCGACGCA 6618195 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | ||||||||||||||| Sbjct 6618196 GGCGAATGCCACGAGGCGCTCGGCGAAG 6618223 Score = 96.9 bits (106), Expect = 4e-15 Identities = 230/342 (67%), Gaps = 18/342 (5%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCA 9281 ||| ||||||||| | | || || || || || |||| ||| || |||||| | || Sbjct 18387644 ATCCAGGATATCAGCCCTGTTGGTGGCAGCTATAACAATAATTCCAGTGTTTCCCT--CA 18387701 Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 |||||||||||||| || | | || || | ||| || |||| |||||| || | Sbjct 18387702 AAACCATCCATCTCAGTAAGTAACTGATTCAAAGTCTGCTCCCTTTCATCGTTTCC---- 18387757 Query 9342 ATACCACCAGCAC-TG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 ||||||| || || | |||| |||| || ||||| || ||||||| || ||| Sbjct 18387758 --ACCACCAATACCTGTCCCTCTTTGCCTTCCAACAGCATCGATTTCATCAACAAATACA 18387815 Query 9396 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 || || || ||| || ||| | | || ||||| ||||| | ||| || || Sbjct 18387816 ATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAAAGATCACGAACTCGGGAGGCACCAACT 18387875 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9514 || ||||||||||||||||| | | | | | || | || || || ||| || ||| Sbjct 18387876 CCCACAAACATCTCCACAAACTCAGATCCTG-ATATCGAGAAAAACGGCACACCAGCTTC 18387934 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || ||||| || ||| || | |||||||| || || || Sbjct 18387935 TCCTGCAATAGCCTTGGCAAGCAAGGTCTTACCAGTTCCAGG 18387976 >seq7 Length=22540073 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 17337723 GTGGAGCCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGGGCATGAGTCC 17337664 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 17337663 ACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCA 17337604 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || ||||| | || |||||||||||| Sbjct 17337603 GGCGAACGCGACGAGCCGCTCGGCGAAG 17337576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980711502880