Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq8 132 6e-26 seq9 125 9e-24 seq5 125 9e-24 seq7 95.1 1e-14 >seq8 Length=20165712 Score = 132 bits (146), Expect = 6e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 182246 CTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGAC 182305 || ||||| ||||| ||||| ||||||||||| ||||| |||||| | ||| | ||||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 182306 CCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGG 182365 || || || ||||| |||||||| || || ||||| || || || ||| | ||||| ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 182366 TTAGCACCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGA 182425 | ||| | ||||| || ||||| || || | ||||||||||| || |||| | Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGT 4128807 Query 182426 GGTAACGCACT 182436 || ||||| || Sbjct 4128808 GGAAACGCTCT 4128818 >seq9 Length=15534364 Score = 125 bits (138), Expect = 9e-24 Identities = 127/164 (77%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 180474 ATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGG 180533 |||||||| ||||| || |||||||| ||||| | ||||||||| |||| || ||| Sbjct 12953792 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 12953851 Query 180534 CCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAAC 180593 ||||| || || || ||||||||||| | || | || || ||||| |||||||| ||| Sbjct 12953852 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 12953911 Query 180594 GGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGT 180637 || ||||| |||||||| || | ||||| | |||||||| || Sbjct 12953912 GGATTCAATTTCAACCAATCTGTAGTTGATAG-CAAGGTCGCGT 12953954 >seq5 Length=20807039 Score = 125 bits (138), Expect = 9e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 181883 TTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGC 181942 |||||||| | |||||| || || || ||||| || || ||| | |||||| |||| || Sbjct 7585978 TTCTTTGCACGGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGA 7586037 Query 181943 TTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGC 182002 ||||||||||||||| | || || || ||||||||||| ||||| || | | || | Sbjct 7586038 TTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCG 7586097 Query 182003 GCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGAC 182062 || || || | || ||||| || | |||||||| || ||||| | | | |||||||| Sbjct 7586098 GCTTTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGAT 7586157 Query 182063 CAAGCAAATACTTT 182076 |||||||| || Sbjct 7586158 GGTGCAAATACCTT 7586171 >seq7 Length=22540073 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 179834 TATCTGCTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGA 179893 || || || ||| | ||||||||||| || | || | || || ||||| || | || Sbjct 5747995 TAGCTTCTGCATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGA 5748054 Query 179894 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTC 179953 || ||| || ||| | | ||||| ||||| || ||||||||||| || ||||| | Sbjct 5748055 GCCTGTCTCTAATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 5748114 Query 179954 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTG 180013 ||| || || || | ||||| || || || |||||||| ||||| |||| |||| Sbjct 5748115 TTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTA 5748174 Query 180014 GCTGTATAACGGTGGTCCTT 180033 ||| | || |||| ||||| Sbjct 5748175 GCTATGCAATGGTGATCCTT 5748194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610396708440480