Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq7 111 2e-19 seq8 107 2e-18 seq9 93.3 5e-14 >seq7 Length=22540073 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 169502 TTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTT 169561 |||| ||||| ||||| |||| | ||||| || || || || || || | || Sbjct 5748009 TTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTCTAATT 5748068 Query 169562 CTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCG 169621 |||| | ||||| ||||| || ||||||||||| || |||| | || || |||| Sbjct 5748069 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCG 5748128 Query 169622 GACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTG 169681 || | ||||| |||||||| |||||||| ||| |||||||||| | | | | ||||||| Sbjct 5748129 GATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAATGGTG 5748188 Query 169682 GTCCTTATCAG 169692 ||||||| || Sbjct 5748189 ATCCTTATAAG 5748199 Score = 95.1 bits (104), Expect = 1e-14 Identities = 170/246 (69%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 169450 TTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGTTGCATT 169508 ||| ||||| | ||||| || |||| | || ||| | | ||| || || | || || Sbjct 5747372 TTTAGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTT 5747430 Query 169509 CATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTT 169568 ||| ||||| ||||| || ||||| || || || | || || || | |||||||| | Sbjct 5747431 CATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGCGAGCCTGTTTCTGGTTCTTTACT 5747490 Query 169569 GTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACA 169628 ||||| |||| ||||| || | || ||| | || | ||| || | || Sbjct 5747491 TTATGGAAACA------TCTCTAGTTCCATTAATCCTGCTTCTGCATCAATCAGATTGCA 5747544 Query 169629 CTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTA 169688 ||| ||||||| ||||| || ||| |||||||| | ||| || |||||||||||||| Sbjct 5747545 CTTTTACCCAAAATGGGAGGCTGCATCTGTTGATCGGTAGTTATACAATGGTGGTCCTTA 5747604 Query 169689 TCAGTT 169694 | |||| Sbjct 5747605 TGAGTT 5747610 >seq8 Length=20165712 Score = 107 bits (118), Expect = 2e-18 Identities = 143/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 171372 CTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGAC 171431 || || || ||||| | || || || ||||| || || || || | ||||| ||||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 171432 CCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGG 171491 || || || |||||||||||||| || ||||| ||| | || || ||||| | || ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 171492 ATGTCA--TCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAA 171549 ||| || |||| || || || ||||| || | ||||||| || || || ||||| Sbjct 4128748 ATGGCAGCTCAG--GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCAC 4128805 Query 171550 GAGGTAACGCACTTTAA 171566 | || ||||| |||||| Sbjct 4128806 GTGGAAACGCTCTTTAA 4128822 >seq9 Length=15534364 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 170117 TTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCC 170176 |||| || | |||||||| |||||| || |||||||| | | ||||||||||| Sbjct 12953781 TTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCT 12953840 Query 170177 TAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCAT 170236 | || | || ||||| ||| | | ||||| || || | ||||| | || ||||| | Sbjct 12953841 TGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTT 12953900 Query 170237 TCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT 170277 ||||| | || || ||||| || |||||||| || |||||| Sbjct 12953901 TCAACCTAAACGGATTCAATTTCAACCAATCTGTAGTTGAT 12953941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579212713118080