Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq8 132 6e-26 seq9 114 1e-20 seq5 109 6e-19 seq7 84.2 3e-11 >seq8 Length=20165712 Score = 132 bits (146), Expect = 6e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 170129 CTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGAT 170188 || ||||| || || ||||| || || || || ||||| ||| | ||||| |||||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 170189 CCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGG 170248 || ||||||||||| |||||||||||||| || || || || || || ||||||| ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 170249 TTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGA 170308 ||||| || ||||| || |||||||| | || ||||| || || ||||| || | Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGT 4128807 Query 170309 GGTAACGCACT 170319 || ||||| || Sbjct 4128808 GGAAACGCTCT 4128818 >seq9 Length=15534364 Score = 114 bits (126), Expect = 1e-20 Identities = 130/173 (75%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 168580 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTT 168639 || || || ||||||||||| ||| || |||||||| || || || ||||||||| | Sbjct 12953783 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12953842 Query 168640 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 168699 ||||| |||||||| || || || |||||||| || | || | || ||||| ||| Sbjct 12953843 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12953902 Query 168700 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGT 168752 ||||| ||||| ||||| |||||||| || | ||||| | || ||||| || Sbjct 12953903 AACCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAG-CAAGGTCGCGT 12953954 >seq5 Length=20807039 Score = 109 bits (120), Expect = 6e-19 Identities = 146/202 (72%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 169759 CTCATGG-TTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCC 169817 |||||| |||||||| | ||||| ||| |||| || || | ||| | | ||| Sbjct 7585970 CTCATGCATTCTTTGCACGGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCT 7586029 Query 169818 TGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCT 169877 | |||||||| || || ||||||||||| ||||| || |||||||| || || ||| | | Sbjct 7586030 TCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTAT 7586089 Query 169878 TGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTGTATGAAG 169937 | |||| || ||||| | ||||| ||||| | || || || ||||| | | ||| | Sbjct 7586090 TAGGCGCGGCTTTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGG 7586149 Query 169938 ACGGTGAGCAGGCAAATACTTT 169959 ||||||| |||||||| || Sbjct 7586150 ACGGTGATGGTGCAAATACCTT 7586171 >seq7 Length=22540073 Score = 84.2 bits (92), Expect = 3e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 167965 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 168024 |||||| |||| || | || | || || || || || | || || ||| || ||| Sbjct 5748011 GCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTCTAATTCT 5748070 Query 168025 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGA 168084 | | ||||| ||||| || ||||||||||| || | ||| ||||| || || ||| Sbjct 5748071 TTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGA 5748130 Query 168085 CTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGT 168144 | ||||| || || || |||||||| ||||| | ||||||| | | | || |||| | Sbjct 5748131 TTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAATGGTGAT 5748190 Query 168145 CCTT 168148 |||| Sbjct 5748191 CCTT 5748194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574473513828960