Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq8 147 2e-30 seq9 123 3e-23 seq5 109 6e-19 seq7 98.7 1e-15 >seq8 Length=20165712 Score = 147 bits (162), Expect = 2e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 166016 CTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGAC 166075 || ||||| ||||| ||||| ||||||||||| ||||| || ||| | ||||| ||||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 166076 CCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGG 166135 || || ||||| || |||||||| ||||| ||||| || || || ||| ||||||| ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 166136 TTGGCACCAGTCGATCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGG 166195 ||||| | ||||| || ||||| || || | |||||||| || ||||| || | Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGT 4128807 Query 166196 GGTAACGCGCT 166206 || ||||| || Sbjct 4128808 GGAAACGCTCT 4128818 >seq9 Length=15534364 Score = 123 bits (136), Expect = 3e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 164500 TTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 164559 |||| || | ||||||||||| ||| || |||||||| ||||| || ||||||||| Sbjct 12953781 TTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCT 12953840 Query 164560 TTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCAT 164619 | ||||| |||||||| || || || |||||||| || | ||| || || ||||| | Sbjct 12953841 TGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTT 12953900 Query 164620 TCAACCTGAACGGTTTCAACTTCAACCAGTC 164650 ||||||| ||||| ||||| |||||||| || Sbjct 12953901 TCAACCTAAACGGATTCAATTTCAACCAATC 12953931 >seq5 Length=20807039 Score = 109 bits (120), Expect = 6e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 165667 TTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGAC 165726 ||| || || ||||| || || | ||| | |||||| | |||||||| ||||| ||||| Sbjct 7585992 TTTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGAC 7586051 Query 165727 CTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGC 165786 ||||| || |||||||||||||| ||||| || | | || | || ||||| | || Sbjct 7586052 GTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTTTGCTATGCGC 7586111 Query 165787 CATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTT 165846 || ||||| | || || || || ||||| | | | || ||||| | ||||||||| || Sbjct 7586112 TATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTT 7586171 >seq7 Length=22540073 Score = 98.7 bits (108), Expect = 1e-15 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 163887 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCG 163946 |||||| |||| || | || | || || |||||||||| || ||||| | ||| Sbjct 5748011 GCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTCTAATTCT 5748070 Query 163947 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGT 164006 | | ||||| ||||| || ||||||||||| || |||| | || || || || Sbjct 5748071 TTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGA 5748130 Query 164007 CTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGT 164066 | ||||| ||||| ||||||||||| ||||| ||||||| | ||| | ||| |||| | Sbjct 5748131 TTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAATGGTGAT 5748190 Query 164067 CCTT 164070 |||| Sbjct 5748191 CCTT 5748194 Score = 93.3 bits (102), Expect = 5e-14 Identities = 164/234 (70%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 163839 GTTCTGATGATCCCTACGCTGCTTG-CAGCAACCATCTGT-TTCATCGTCGCCTTCGTCG 163896 ||| ||||||||||||| || ||| | ||||| ||||| || || |||||||| ||| Sbjct 5747378 GTTTTGATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCG 5747435 Query 163897 CTGCTCCCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATG 163956 | || || || || || || ||||||||||| || |||||| | ||||| | | |||| Sbjct 5747436 CAGCCCCTCCAGTAGATATTGATGGTATTCGCGAGCCTGTTTCTGGTTCTTTACTTTATG 5747495 Query 163957 GTAACAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCT 164016 | || ||||||| || | || ||| | || |||| | | ||||| | Sbjct 5747496 GAAA------CATCTCTAGTTCCATTAATCCTGCTTCTGCATCAATCAGATTGCACTTTT 5747549 Query 164017 ACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTT 164070 |||| | ||||| || ||||| ||||| | | | ||||| |||||||||| Sbjct 5747550 ACCCAAAATGGGAGGCTGCATCTGTTGATCGGTAGTTATACAATGGTGGTCCTT 5747603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556924716461280